mRNA_Ecto-sp9_F_contig10707.630.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10707.630.1
Unique NamemRNA_Ecto-sp9_F_contig10707.630.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL5_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 7.870e-193
Identity = 269/280 (96.07%), Postives = 276/280 (98.57%), Query Frame = 1
Query:    1 VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPVVHPV 840
            VC+RLVNENV+ARCEAQ+CVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVT+QTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDID DS SGSGRSVS RESGDTPRGTCLIVDDTASIRKM+HHFLKKHDVDLACNG EGLERLKKKEYDIVLMDISMPVMDGR+CLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSP+VHPV
Sbjct:  307 VCSRLVNENVDARCEAQACVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTHQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDTDSTSGSGRSVSLRESGDTPRGTCLIVDDTASIRKMMHHFLKKHDVDLACNGEEGLERLKKKEYDIVLMDISMPVMDGRKCLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPMVHPV 586          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F2_9PHAE)

HSP 1 Score: 498 bits (1282), Expect = 3.280e-175
Identity = 248/279 (88.89%), Postives = 258/279 (92.47%), Query Frame = 1
Query:    1 VCTRLVNENVEARCEAQSCVPPSLLTD-----VEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGS 822
            VC RLVNENVEARC+AQ+CVP SLLTD     VEWVWQILMNLVTNAAKYTHRGRI+VIVGYRD  L LRVEDTGIGIDDSKKGAVFG YVT+QTYGHASHGIGLYSVKTKVDALGGSCRV DNPGGGT+FEVLIPAKVDKDIDIDSPSGSGRSVS RESGDT RGTCLIVDDTASIRKM+ HFLK+HDVDLACNGVEGLERLK KEYDIVLMDISMPVMDGRECLARFR+WEAVNR NRQRIY+MSANV+EVD GFDGSLPKPMD KRLR LLQKR S
Sbjct:  106 VCNRLVNENVEARCQAQACVPASLLTDGLLTDVEWVWQILMNLVTNAAKYTHRGRINVIVGYRDGRLSLRVEDTGIGIDDSKKGAVFGMYVTHQTYGHASHGIGLYSVKTKVDALGGSCRVFDNPGGGTIFEVLIPAKVDKDIDIDSPSGSGRSVSLRESGDTTRGTCLIVDDTASIRKMMRHFLKQHDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVEVDTGFDGSLPKPMDGKRLRGLLQKRES 384          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Response (regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN7_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.200e-107
Identity = 156/174 (89.66%), Postives = 162/174 (93.10%), Query Frame = 1
Query:  319 VDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPVVHPV 840
            VDALGGSCRV DNPGGGT+FEVLIPAKVDKDIDIDSPSGSGRSVS RESGDT RGTCLIVDDTASIRKM+ HFLK+HDVDLACNGVEGLERLK KEYDIVLMDISMPVMDGRECLARFR+WEAVNR NRQRIY+MSANV+EVD GFDGSLPKPMD KRLR LLQKR S  VHPV
Sbjct:    2 VDALGGSCRVFDNPGGGTIFEVLIPAKVDKDIDIDSPSGSGRSVSLRESGDTTRGTCLIVDDTASIRKMMRHFLKQHDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVEVDTGFDGSLPKPMDGKRLRGLLQKRESLKVHPV 175          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: EsV-1-112 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV4_ESV1K)

HSP 1 Score: 231 bits (590), Expect = 1.600e-68
Identity = 132/275 (48.00%), Postives = 173/275 (62.91%), Query Frame = 1
Query:    1 VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGY-RDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQ-TYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNR---SNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQ 810
            VC R+  E V +RC     +P  +LTD EW++QILM L TNAA+YTH G IDV +   +   L + V DTG+GI DS+K  VF K  TN  T GH S G+GL SVK KV ALGG   + DN GGGTV  V IP K    +  D  +G+  S +   +    R + L+VDDT S+RK++  FLK H V++A +G +GL+++K K YD+V +D+ MPVMDG +CL +FREWE +NR    N Q +Y MSA       GFDGS+PKP+D  RL  +LQ
Sbjct:  314 VCIRV--EAVNSRCIVGDGIPAFVLTDGEWLFQILMTLATNAARYTHSGSIDVDINLVQSTHLLIVVRDTGVGIPDSEKRDVFDKDFTNDATNGHGSTGLGLNSVKRKVSALGGLYTITDNDGGGTVLSVQIPVK----LSADCYAGNVESNTDNVNACRVR-SILVVDDTPSVRKLMWRFLKDHMVEVAVDGADGLQKMKDKRYDVVFLDMMMPVMDGTQCLVQFREWEKLNRCGADNHQVVYCMSATSTNHLPGFDGSMPKPVDPTRLLSMLQ 581          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP)

HSP 1 Score: 145 bits (367), Expect = 3.420e-36
Identity = 101/302 (33.44%), Postives = 149/302 (49.34%), Query Frame = 1
Query:   58 VPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDD----CLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIP-----AKVDKDIDIDSPSGSG--------------RSVSPRESGDTP------------RGTCLIVDDTASIRKMVHHFLKKHDVDL--ACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWE---AVNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQKRGSP 825
            V   ++TD EW W +LMN ++NA K+T  G I   VG   +     L+++V DTGIGI + ++  +F  +   Q +   + G+GLYSV  K++ LGG+C V  N   G+VF   IP      + +  ++   PSG G              R+    E G +             +GT L+++D    R+++   L+K    +  A NG EGLE+LK+  Y +VL DI MPVMDG EC+ RFR+WE   A      Q + ++SAN    D       G +   PKP+  K L   LQ +  P
Sbjct:  304 VAEQIITDKEWFWHMLMNFLSNARKFTTEGYIRTSVGIASEGGVEYLDVKVADTGIGIQEEQRKKLFAAFSQLQDFAGGT-GLGLYSVLKKINVLGGACGVEANTPKGSVFWFKIPYVPCTPEAESSLEEVQPSGRGVWHNSAELTFSSNTRAERVVERGASAGDVLTGSAKAAGKGTVLLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMNDFFPKPVKIKELLSHLQGKFLP 604          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L196_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 5.830e-34
Identity = 93/277 (33.57%), Postives = 143/277 (51.62%), Query Frame = 1
Query:   61 PPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDV---IVGYRDDC--LELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGT----------CLIVDDTASIRKMVHHFLKK---HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEA--VNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQK 813
            PP L TD   +W IL++L+TNA ++T  G I+V   + G++D    +++ V+DTG GI  + +  +F +   N   G +  G+G Y+V+  +  LGGSC  +DN   G+VF +  P  +    D+        S SP +   +   T           L++DD  +IRKM    L+K    +VD+A NG +GLE LKK  Y +V  D  MPVM+G EC+  +REWE    + + R  I  MSAN    D       G D    KP+   +L+ ++++
Sbjct:  260 PPFLGTDEGLLWHILVDLLTNACQWTDEGSIEVKFSVSGWKDQVQLIKVEVKDTGCGIHQNIRSRLFQEPFVNT--GKSGFGLGCYNVRKNISMLGGSCGFVDNVPKGSVFWIEFP-NIPSVHDLQPMKQVATSGSPAKRPASQAATPPPLMPSSHKLLVIDDCMTIRKMTQRLLQKLGHENVDIAENGKDGLELLKKSSYSLVFCDFLMPVMNGVECVRAYREWEKGQPDLAKRTVIVGMSANAEPNDVQNAQNNGMDEFCVKPITLSKLKEVIER 533          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LDX2_MAGMO)

HSP 1 Score: 139 bits (351), Expect = 7.900e-34
Identity = 88/273 (32.23%), Postives = 140/273 (51.28%), Query Frame = 1
Query:   43 EAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSP-RESGDTPRGTCLIVDDTASIRKMVHHFLKK--HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQKRGSP 825
            + Q  +P  ++ D   V Q+L+NL++NA K+T  GRI +    + + L   VED+GIGIDD++  A+F K+    +  T      G+GL   +  V+ +GG   V  N   G  F   IP +        S     R +SP ++   TP    L+V+D+   R ++  FLK+  H + LACNG EG+E ++ + + ++LMD+ MPVMDG       R+WEA        I +++A+ +E DA      G D  + KP+    L + +Q+   P
Sbjct:  397 DQQETLPVQVVGDAGRVRQVLLNLISNAIKFTDAGRIAISAHMQSEQLLFEVEDSGIGIDDTQIHAIFEKFTQVDSGMTRRFGGSGLGLTISRQLVELMGGQIGVKRNTTIGCTFYFSIPYQQA------SQQKQNRPLSPPKDDATTPPCKILLVEDSEDNRLLIQSFLKRTNHQLVLACNGQEGVESVQSESFQLILMDMQMPVMDGYSATRAIRQWEAAQHHPATPIVALTAHALEGDAEKSLQAGCDAHITKPIKKNTLLKTIQRFALP 663          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: PAS (domain-containing hybrid sensor histidine kinase/response regulator n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE4A7B0)

HSP 1 Score: 137 bits (344), Expect = 6.160e-33
Identity = 87/258 (33.72%), Postives = 135/258 (52.33%), Query Frame = 1
Query:   97 QILMNLVTNAAKYTHRGRIDVIVGYRDD-----CLELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEV---LIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKK--HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVD------AGFDGSLPKPMDAKRLRRLLQK 813
            QI+ NL+ NA K+T +GRIDV+V  R +     CL L V DTG+GI   K   +F K++    +    H   G+GL   K   +A+GG+  V   PG G+ F V   L  +  D+ ++ D+ +   R               L+V+D      +V   L +  +  D+A NG+EG+ R+++  YD++LMD+ MP MDG E   R R+ E+   ++R  I +M+A+V + D      AG D  +PKP D K+L  +L +
Sbjct:  383 QIVTNLLANAVKFTDKGRIDVMVALRSEDSDQSCLSLSVADTGVGIPADKVDVIFDKFMQADASVARSHGGSGLGLSICKALAEAMGGAISVQSTPGLGSTFTVNICLAHSARDERMNADTETAEARR------------NVLVVEDFEPNVLVVSSVLDELGYSYDVATNGMEGVRRVERGAYDLILMDVQMPGMDGFESTRRIRQMESERGAHRTPIVAMTAHVFDRDKHKCLEAGMDDFIPKPFDPKQLESVLSR 628          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LJU9_MAGMO)

HSP 1 Score: 134 bits (336), Expect = 7.520e-32
Identity = 89/282 (31.56%), Postives = 139/282 (49.29%), Query Frame = 1
Query:   22 ENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRD----DCLELRVEDTGIGIDDSKKGAVFGKYVTNQ---TYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDL--ACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIE------VDAGFDGSLPKPMDAK-RLRRLLQKRG 819
            + VE + E     P ++  DV  V Q+L NL++NA K+T  G I V +  +        +L V DTG+GI ++ +  +F K+  +    T      G+GL+  +  V  +GGS  +L   G G+ F V +P K       D          P  + + P    L+VDD+   R ++  FLK     L  A NG E LE++++  YD+ LMD+ MPVMDG E   R R+WE         + +++A+V+       ++AG DG L KP+  +  L+ L+Q  G
Sbjct:  346 KGVELKMELPGSFPTTVSLDVSRVQQVLFNLLSNALKFTESGEIVVALSTKQVDGSAGFQLSVSDTGVGIAEADQIHIFDKFTQSDGSMTRRFGGTGLGLHICQRLVGLMGGSIYLLSEQGKGSRFTVELPFKEPVSTTADDKRSPAGQHPPLSTEEIPPLKILLVDDSEDNRALIQAFLKSTPCVLEEASNGAEALEKMQRNRYDLTLMDMQMPVMDGLEATRRHRQWEVEQGREPMLVIALTAHVMAEHQKMAMEAGCDGYLTKPLKKRVLLKELMQLPG 627          
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Halobacteriovorax marinus TaxID=97084 RepID=A0A1Y5F9X5_9PROT)

HSP 1 Score: 131 bits (329), Expect = 3.990e-31
Identity = 90/257 (35.02%), Postives = 131/257 (50.97%), Query Frame = 1
Query:   73 LTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDC-LELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHD--VDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVD------AGFDGSLPKPMDAKRLRRLL 807
            L D   + QIL NL++NA K+T  G I + V  +    L   V DTGIGI++SK   +F  +    T+ T      G+GL  VK      GG   V  NPG G+ F + +P +   +I +        +V P    D      L+ +D   I K++  +L+K    VD+  NG +G+E  K  EYDIVLMDISMP+M+G E     R +E   +     I ++SANV++ D      +GF+  LPKP+ +K LR  +
Sbjct:  280 LGDSHRLRQILSNLISNALKFTEVGTITLNVSRKSQGDLLFEVIDTGIGIEESKLELIFDSFSQADTSTTRKFGGTGLGLSIVKRLTALWGGVVEVKSNPGVGSTFSISLPMEESSNISL-LDEKKEFNVEPLSQIDLSSIKVLLCEDNNVIIKLMTKYLEKMSIKVDIGKNGQQGVELFKSNEYDIVLMDISMPIMNGLEATVHMRNYEVETKKMATPIVAVSANVLKEDVDCYLSSGFNAHLPKPLCSKTLRETI 535          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Histidine7.870e-19396.07kinase receptor n=1 Tax=Ectocarpus siliculosus Tax... [more]
Uncharacterized3.280e-17588.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Response1.200e-10789.66regulatory domain-containing protein n=1 Tax=Ectoc... [more]
EsV-1-1121.600e-6848.00n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
Hypothetical3.420e-3633.44protein n=1 Tax=Hemiselmis tepida TaxID=464990 Rep... [more]
Uncharacterized5.830e-3433.57protein n=1 Tax=Arcella intermedia TaxID=1963864 R... [more]
Histidine7.900e-3432.23kinase n=1 Tax=Magnetococcus massalia (strain MO-1... [more]
PAS6.160e-3333.72domain-containing hybrid sensor histidine kinase/r... [more]
Histidine7.520e-3231.56kinase n=1 Tax=Magnetococcus massalia (strain MO-1... [more]
Histidine3.990e-3135.02kinase n=1 Tax=Halobacteriovorax marinus TaxID=970... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10707contigEcto-sp9_F_contig10707:2066..4276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score550.4
Seed ortholog evalue4.7e-154
Seed eggNOG ortholog2880.D8LHL5
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG0642@1,KOG0519@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine kinase receptor
Ec32 orthologEc-26_003580.1
Exons3
Model size843
Cds size843
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10707.630.1prot_Ecto-sp9_F_contig10707.630.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10707 2066..4276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.0195508-CDS-Ecto-sp9_F_contig10707:2065..22401622928291.0195508-CDS-Ecto-sp9_F_contig10707:2065..2240Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 2066..2240 -
1692277823.5562294-CDS-Ecto-sp9_F_contig10707:2065..22401692277823.5562294-CDS-Ecto-sp9_F_contig10707:2065..2240Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 2066..2240 -
1622928291.036063-CDS-Ecto-sp9_F_contig10707:2772..30591622928291.036063-CDS-Ecto-sp9_F_contig10707:2772..3059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 2773..3059 -
1692277823.5663779-CDS-Ecto-sp9_F_contig10707:2772..30591692277823.5663779-CDS-Ecto-sp9_F_contig10707:2772..3059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 2773..3059 -
1622928291.0479841-CDS-Ecto-sp9_F_contig10707:3895..42761622928291.0479841-CDS-Ecto-sp9_F_contig10707:3895..4276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 3896..4276 -
1692277823.5740466-CDS-Ecto-sp9_F_contig10707:3895..42761692277823.5740466-CDS-Ecto-sp9_F_contig10707:3895..4276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10707 3896..4276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10707.630.1

>prot_Ecto-sp9_F_contig10707.630.1 ID=prot_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp
VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGR
IDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGL
YSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSV
SPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKK
KEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDA
GFDGSLPKPMDAKRLRRLLQKRGSPVVHPV*
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mRNA from alignment at Ecto-sp9_F_contig10707:2066..4276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10707.630.1 ID=mRNA_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2211bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10707:2066..4276- (Ectocarpus species9 EcSCA_722f female)
GTGTGCACCAGGTTGGTAAACGAGAACGTCGAGGCCCGCTGCGAGGCCCA GTCGTGCGTCCCCCCCTCCCTGCTGACGGACGTGGAGTGGGTGTGGCAGA TCCTCATGAACCTTGTCACCAATGCCGCCAAGTACACGCACAGGGGCCGC ATCGACGTGATCGTCGGCTACCGGGACGACTGTCTGGAGCTCCGCGTGGA AGACACCGGGATCGGGATCGACGACTCCAAGAAGGGAGCCGTGTTCGGCA AGTACGTGACCAACCAGACGTACGGGCACGCCTCGCACGGCATCGGGCTC TACTCGGTCAAGACCAAGGTCGACGCCCTGGGGGGCTCGTGCAGGGTCTT GGACAATCCCGGCGGGGGTACTGTTTTCGAGGTGAGCAACAGCACCAACG TGCATGTACACACCGCGCTAGTTGGTGCGCTTGACGATAGTGCACGCATG GCTTGTGTGTTCGAGGTGAAACAACAACAACAGCACAACGTGCATGTACC ACCGTGGTAGTTAGCACGCGTATCGCAAGGATAGTATGTGCGTATTAACG TTGTTTTCCTTCCGAGGCACTTTATCTATGGGCTATTGTGGGTGTGCCAC GCTTCAGAAGTGTAGCCGCGTAACCGCTATCCGCAGGTTTTGGGCTACTT GTTTCTTTTCCTAGTGTGCGTGCATGGCTTTCCTGTTAGTCTTTGTGATT TGTTAAATGTGTTGGCACACCATATCATTGGGATTATTCTCCGCCATAAT GAGAGGAGGAGCGGATGGGGGTTAAGATGCACTACATGGCAGAGCTGACA GGAACGACTCCCCGCTATCAGAAATAAGTTTGTGGTCTTAACCGCTTCTA TGGGACAGCGCGCAAGAGAGAGAGAGAAACGTCCCCGTCGGAAATCCTGG TCCGAAAGGGTCGCCTATCTGTCTCGCCTCGTGTGTGGGGTATGGTAAGC AGCAACAATAGACGTCGGCCACAAGCATGCAGGAAGCCTGGTCCAAAGTC GTCGTCTTCTCGGACACAACGTTCGTGACACAAGTCCGGACGATGTACAA TAGTCTGTCCCAACATCGAGCTGGATCCTAGTATGTAGCTCCGTGAGCCT ATCCCCAAAGGAGTTTAGGATTGCTCGTCCATACATGACAGGGCAAACCG CCGTACCCTGCATACAACTGAAAGACAAGGACTGACACACTCCAACGGCC TCCTTACTTCCACACAGGTTCTGATCCCGGCGAAAGTGGACAAGGACATC GATATCGACAGCCCCAGCGGCAGCGGCCGGAGCGTTTCGCCCCGGGAGAG CGGCGACACCCCCCGGGGGACGTGCCTGATCGTGGACGACACGGCCTCCA TCAGGAAGATGGTGCACCACTTCCTCAAGAAGCACGACGTCGACCTCGCG TGTAACGGTGTGGAGGGCCTAGAGAGACTCAAGAAGAAGGAGTACGACAT TGTGCTCATGGACATCTCGATGCCTGTCATGGACGGGAGGGAGTGTTTGG CGAGGTGAGGAGGCGTGCCGTTGTACGGTGGAGGTCGACAGGCTGAGGAG AAGGCTAGCCCGGGACCCAATGCTCGAAAATATGTGGATGGCGGAATTGA TCGGTAGATTCCGAGGCCATGCCCCCGGGTGACGTTCGAGAGAGCTCTGC AGCTACGTTTTTGGGTTATTAGCTCGGGGTCCCGCGAATAGCTTGCATGG AAAAGTAAGGCGCCATCATTAAGCGTGCGCAACCCGCCGGAACGGACCGG TCTTGAAACGGGTCGCGACCGTACACGTTGTTTTTCTCTAGCTTCAGCCG ACCACGAACGGATGTCGAACGAACGGAGGACGACTGGAAACGAATAGCAA CGAAAAAGTGATCGTAGGGCCAAGCCACGAAAATCAAACGAAACAAGAGA CGCAGCCGCGGCCATGAATTCCAGGCAGATATGCTCGGTGCCAGAGGAAC CCGCTAGAAATGGTAAGACACGCGGTGCCCCTTGCCTCCGCCCCCCTCGC CCCCCTCTCCCGTCGTCATCTCTCGGCGCGACTCAGGTTTAGGGAGTGGG AAGCGGTGAACAGATCGAACCGCCAGCGGATATACTCCATGTCGGCCAAC GTTATCGAAGTCGACGCCGGCTTCGACGGGTCTCTGCCCAAGCCCATGGA TGCCAAGAGACTGCGAAGGCTCCTCCAAAAACGGGGATCGCCAGTAGTGC ACCCGGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10707:2066..4276-

>mRNA_Ecto-sp9_F_contig10707.630.1 ID=mRNA_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10707:2066..4276- (Ectocarpus species9 EcSCA_722f female)
GTGTGCACCAGGTTGGTAAACGAGAACGTCGAGGCCCGCTGCGAGGCCCA
GTCGTGCGTCCCCCCCTCCCTGCTGACGGACGTGGAGTGGGTGTGGCAGA
TCCTCATGAACCTTGTCACCAATGCCGCCAAGTACACGCACAGGGGCCGC
ATCGACGTGATCGTCGGCTACCGGGACGACTGTCTGGAGCTCCGCGTGGA
AGACACCGGGATCGGGATCGACGACTCCAAGAAGGGAGCCGTGTTCGGCA
AGTACGTGACCAACCAGACGTACGGGCACGCCTCGCACGGCATCGGGCTC
TACTCGGTCAAGACCAAGGTCGACGCCCTGGGGGGCTCGTGCAGGGTCTT
GGACAATCCCGGCGGGGGTACTGTTTTCGAGGTGTGCACCAGGTTGGTAA
ACGAGAACGTCGAGGCCCGCTGCGAGGCCCAGTCGTGCGTCCCCCCCTCC
CTGCTGACGGACGTGGAGTGGGTGTGGCAGATCCTCATGAACCTTGTCAC
CAATGCCGCCAAGTACACGCACAGGGGCCGCATCGACGTGATCGTCGGCT
ACCGGGACGACTGTCTGGAGCTCCGCGTGGAAGACACCGGGATCGGGATC
GACGACTCCAAGAAGGGAGCCGTGTTCGGCAAGTACGTGACCAACCAGAC
GTACGGGCACGCCTCGCACGGCATCGGGCTCTACTCGGTCAAGACCAAGG
TCGACGCCCTGGGGGGCTCGTGCAGGGTCTTGGACAATCCCGGCGGGGGT
ACTGTTTTCGAGGTTCTGATCCCGGCGAAAGTGGACAAGGACATCGATAT
CGACAGCCCCAGCGGCAGCGGCCGGAGCGTTTCGCCCCGGGAGAGCGGCG
ACACCCCCCGGGGGACGTGCCTGATCGTGGACGACACGGCCTCCATCAGG
AAGATGGTGCACCACTTCCTCAAGAAGCACGACGTCGACCTCGCGTGTAA
CGGTGTGGAGGGCCTAGAGAGACTCAAGAAGAAGGAGTACGACATTGTGC
TCATGGACATCTCGATGCCTGTCATGGACGGGAGGGAGTGTTTGGCGAGG
TTCTGATCCCGGCGAAAGTGGACAAGGACATCGATATCGACAGCCCCAGC
GGCAGCGGCCGGAGCGTTTCGCCCCGGGAGAGCGGCGACACCCCCCGGGG
GACGTGCCTGATCGTGGACGACACGGCCTCCATCAGGAAGATGGTGCACC
ACTTCCTCAAGAAGCACGACGTCGACCTCGCGTGTAACGGTGTGGAGGGC
CTAGAGAGACTCAAGAAGAAGGAGTACGACATTGTGCTCATGGACATCTC
GATGCCTGTCATGGACGGGAGGGAGTGTTTGGCGAGGTTTAGGGAGTGGG
AAGCGGTGAACAGATCGAACCGCCAGCGGATATACTCCATGTCGGCCAAC
GTTATCGAAGTCGACGCCGGCTTCGACGGGTCTCTGCCCAAGCCCATGGA
TGCCAAGAGACTGCGAAGGCTCCTCCAAAAACGGGGATCGCCAGTAGTGC
ACCCGGTTTGAGTTTAGGGAGTGGGAAGCGGTGAACAGATCGAACCGCCA
GCGGATATACTCCATGTCGGCCAACGTTATCGAAGTCGACGCCGGCTTCG
ACGGGTCTCTGCCCAAGCCCATGGATGCCAAGAGACTGCGAAGGCTCCTC
CAAAAACGGGGATCGCCAGTAGTGCACCCGGTTTGA
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