prot_Ecto-sp9_F_contig10703.628.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10703.628.1
Unique Nameprot_Ecto-sp9_F_contig10703.628.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length303
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Lissencephaly (protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.310e-27
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0 
Query:    7 SSPQLSTASTSRSTXXXXXXXXXXXXXXXXXXXXXXSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK 98
            SSPQLSTASTSRSTXXXXXXXXXXXXXXXXXXXX  SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK
Sbjct:    6 SSPQLSTASTSRSTXXXXXXXXXXXXXXXXXXXX--SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK 95
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRZ9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.840e-9
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   45 FPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+RA R
Sbjct:   32 FPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZAS1_ELYCH)

HSP 1 Score: 65.5 bits (158), Expect = 2.740e-8
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   48 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            DP LER FRG    VT V +SP+M QL SS+ DNNLMVW F+A++RA R
Sbjct:    6 DPSLERHFRGHRDVVTAVDFSPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F002_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 3.310e-8
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0 
Query:   46 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            P+DP LER+FRG    V+ VS+SP MKQLVS   D  +MVW F+ Q+RA R
Sbjct:    6 PMDPALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMRAFR 56
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQU3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.330e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   45 FPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            FP+DP L+RTFRG  + V  +SYSP+M+QL S + D  +M+W F+ Q+RA R
Sbjct:   32 FPMDPSLQRTFRGHKSGVECLSYSPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JD71_BIOGL)

HSP 1 Score: 64.3 bits (155), Expect = 6.440e-8
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   48 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            DP LER FRG    VT V ++P+M QL SS+ DNNLMVW F+A++RA R
Sbjct:    6 DPSLERHFRGHRDVVTSVDFNPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: POC1 (centriolar protein homolog A isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI000359547A)

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-8
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   48 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            DP LER FRG    VT V ++P+M QL SS+ DNNLMVW F+A++RA R
Sbjct:    6 DPSLERHFRGHRDVVTAVDFNPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Macro (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F511_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.950e-7
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   45 FPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+RA R
Sbjct:   32 FPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
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BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BTT4_9EUPU)

HSP 1 Score: 62.8 bits (151), Expect = 2.090e-7
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   48 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            DP LER FRG    VT V +SP+M QL SS+ D+NLMVW F+A++RA R
Sbjct:    6 DPYLERHFRGHQDVVTSVDFSPNMTQLASSSLDHNLMVWNFKAKMRAYR 54
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Match: Putative (POC1 centriolar protein-like A isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LCQ3_STIJA)

HSP 1 Score: 61.6 bits (148), Expect = 5.090e-7
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:   44 IFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 96
            + P DP LER ++G    VT V ++P+MKQL S   D+ LMVW F+AQ+RA R
Sbjct:   39 LVPEDPTLERNYKGHRDTVTSVDFNPNMKQLASGGMDSCLMVWNFKAQMRAFR 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10703.628.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Lissencephaly1.310e-2797.83protein 1-like n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized4.840e-950.00protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized2.740e-861.22protein n=1 Tax=Elysia chlorotica TaxID=188477 Rep... [more]
Uncharacterized3.310e-856.86protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
Uncharacterized6.330e-851.92protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized6.440e-859.18protein n=1 Tax=Biomphalaria glabrata TaxID=6526 R... [more]
POC16.500e-859.18centriolar protein homolog A isoform X1 n=2 Tax=Ap... [more]
Macro1.950e-750.00domain-containing protein n=1 Tax=Aphanomyces asta... [more]
Uncharacterized2.090e-759.18protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID... [more]
Putative5.090e-750.94POC1 centriolar protein-like A isoform X2 n=1 Tax=... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 116..130
score: 36.0
coord: 282..296
score: 38.08
coord: 240..254
score: 37.93
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 256..295
e-value: 2.1E-9
score: 47.2
coord: 214..253
e-value: 1.2E-11
score: 54.7
coord: 90..129
e-value: 2.5E-7
score: 40.3
coord: 172..211
e-value: 2.7E-9
score: 46.9
coord: 132..169
e-value: 0.011
score: 24.9
coord: 48..87
e-value: 3.9E-5
score: 33.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 216..253
e-value: 4.3E-8
score: 33.7
coord: 138..167
e-value: 6.7E-4
score: 20.4
coord: 97..128
e-value: 1.5E-7
score: 32.0
coord: 176..211
e-value: 2.1E-8
score: 34.7
coord: 258..295
e-value: 4.0E-8
score: 33.8
coord: 52..86
e-value: 0.0054
score: 17.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 263..303
score: 17.226
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 221..262
score: 13.951
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 179..220
score: 15.922
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 139..167
score: 9.372
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 55..89
score: 11.645
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 97..128
score: 15.254
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 34..136
e-value: 4.3E-21
score: 77.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 227..303
e-value: 4.0E-25
score: 90.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 137..226
e-value: 2.0E-29
score: 104.5
NoneNo IPR availablePANTHERPTHR44019FAMILY NOT NAMEDcoord: 47..303
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 47..303
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 198..212
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 282..296
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 240..254
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 55..303
score: 59.822
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 46..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10703contigEcto-sp9_F_contig10703:389..4410 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10703.628.1mRNA_Ecto-sp9_F_contig10703.628.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10703 389..4410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10703.628.1 ID=prot_Ecto-sp9_F_contig10703.628.1|Name=mRNA_Ecto-sp9_F_contig10703.628.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=303bp
TKHATGSSPQLSTASTSRSTTAAAKHGGLRAPPAAAAAAAAASIFPVDPE
LERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLKGH
SAAVHHAEFSPNGSLVASASKDRTVRLWTPSARGGSSVLKGHMGGVRHAS
FSRNGRLLITASEDKTIWSLPSQRFVCTLNGHNNWVRCATFSPDSRLATS
CGDDKAVRLWDVQTQDCLRTFFDHDGPVRQARFHPDGTCVAACSADRTIK
VWDARSHQLLQHYPAHDGDVTSISFHESGNFLLSSSTDASLKIWDLREGR
LVY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf