mRNA_Ecto-sp9_F_contig10701.627.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10701.627.1
Unique NamemRNA_Ecto-sp9_F_contig10701.627.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10701.627.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10701contigEcto-sp9_F_contig10701:2584..3373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_000480.1
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928290.735043-CDS-Ecto-sp9_F_contig10701:2583..26631622928290.735043-CDS-Ecto-sp9_F_contig10701:2583..2663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10701 2584..2663 -
1692277823.468063-CDS-Ecto-sp9_F_contig10701:2583..26631692277823.468063-CDS-Ecto-sp9_F_contig10701:2583..2663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10701 2584..2663 -
1622928290.7550552-CDS-Ecto-sp9_F_contig10701:3198..33731622928290.7550552-CDS-Ecto-sp9_F_contig10701:3198..3373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10701 3199..3373 -
1692277823.4767125-CDS-Ecto-sp9_F_contig10701:3198..33731692277823.4767125-CDS-Ecto-sp9_F_contig10701:3198..3373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10701 3199..3373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10701.627.1prot_Ecto-sp9_F_contig10701.627.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10701 2584..3373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10701.627.1

>prot_Ecto-sp9_F_contig10701.627.1 ID=prot_Ecto-sp9_F_contig10701.627.1|Name=mRNA_Ecto-sp9_F_contig10701.627.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
MTISSSSPPFLQLQPPLAMPTDSLTSILHAKTADRDKAELQTNIERAHRN
EKKKDTHAPSERAPAKAIQIRLSPDFAYLATTSI*
back to top

mRNA from alignment at Ecto-sp9_F_contig10701:2584..3373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10701.627.1 ID=mRNA_Ecto-sp9_F_contig10701.627.1|Name=mRNA_Ecto-sp9_F_contig10701.627.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10701:2584..3373- (Ectocarpus species9 EcSCA_722f female)
ATGACAATATCTTCATCTTCGCCTCCCTTCCTCCAGCTCCAACCACCCCT
CGCTATGCCGACCGACAGTCTCACCTCCATCCTCCATGCCAAGACAGCCG
ACAGAGACAAAGCCGAACTGCAAACCAACATAGAACGCGCACACAGAAAC
GAAAAAAAAAAAGACACGCACGCACGTAAACAATCCAACAACGTTGCAGG
AAAGCCGGCCCGGGACCCCCCCTTCCCCCCCCACCGTCCAAACCCCGCAC
AAAATTTCTCACTAGGCAGGCTGGCCGGTCGGCCTTCGCGCCCAAAGCCA
AGAGGGAAAGCAAGCGAAAGCAAGCGAAAGCAAGCGAAAACAGAGAGGAC
TATCGGGCCCAAGACCTTGATGAAGCCACTCCACGCGAATAGGAAACTTT
GGTTGCGCTAAAAGATGAGGAGGCGTCAATGCCGCTGGAGGCGTGCGTGC
GTGCGTTCTTTCGTTCGTTCGCACCAGTCTACCCACGAAAAGCAAACGGA
CACCCACCGAATTTACTTCACACACGCCATCTAACACTAAAAGAATGCTA
GGGCCATCACAACGACAACATGCAAAAAAGAAAAAAGAACACACACTTCT
CGCTCGCAAATGCAATTGCAGCAGCAGCAGCAGCAGGGGGGTCACAGCCG
CCTTTCGTGCAAACGTCAACCAAATCAAACCACGGGCGCGCGCCACACAC
AGCCTTAAAGCGTCTGAACGTGCCCCGGCCAAAGCCATTCAAATCCGTCT
CTCGCCCGACTTTGCCTACCTCGCGACAACCAGCATCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10701:2584..3373-

>mRNA_Ecto-sp9_F_contig10701.627.1 ID=mRNA_Ecto-sp9_F_contig10701.627.1|Name=mRNA_Ecto-sp9_F_contig10701.627.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10701:2584..3373- (Ectocarpus species9 EcSCA_722f female)
ATGACAATATCTTCATCTTCGCCTCCCTTCCTCCAGCTCCAACCACCCCT
CGCTATGCCGACCGACAGTCTCACCTCCATCCTCCATGCCAAGACAGCCG
ACAGAGACAAAGCCGAACTGCAAACCAACATAGAACGCGCACACAGAAAC
GAAAAAAAAAAAGACACGCACGCACATGACAATATCTTCATCTTCGCCTC
CCTTCCTCCAGCTCCAACCACCCCTCGCTATGCCGACCGACAGTCTCACC
TCCATCCTCCATGCCAAGACAGCCGACAGAGACAAAGCCGAACTGCAAAC
CAACATAGAACGCGCACACAGAAACGAAAAAAAAAAAGACACGCACGCAC
CGTCTGAACGTGCCCCGGCCAAAGCCATTCAAATCCGTCTCTCGCCCGAC
TTTGCCTACCTCGCGACAACCAGCATCTAGCGTCTGAACGTGCCCCGGCC
AAAGCCATTCAAATCCGTCTCTCGCCCGACTTTGCCTACCTCGCGACAAC
CAGCATCTAG
back to top