mRNA_Ecto-sp9_F_contig1069.613.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1069.613.1
Unique NamemRNA_Ecto-sp9_F_contig1069.613.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1069.613.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1069contigEcto-sp9_F_contig1069:21843..22314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928286.6631644-CDS-Ecto-sp9_F_contig1069:21842..221601622928286.6631644-CDS-Ecto-sp9_F_contig1069:21842..22160Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1069 21843..22160 +
1692277821.8856206-CDS-Ecto-sp9_F_contig1069:21842..221601692277821.8856206-CDS-Ecto-sp9_F_contig1069:21842..22160Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1069 21843..22160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928286.679379-UTR-Ecto-sp9_F_contig1069:22160..223141622928286.679379-UTR-Ecto-sp9_F_contig1069:22160..22314Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1069 22161..22314 +
1692277821.89541-UTR-Ecto-sp9_F_contig1069:22160..223141692277821.89541-UTR-Ecto-sp9_F_contig1069:22160..22314Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1069 22161..22314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1069.613.1prot_Ecto-sp9_F_contig1069.613.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1069 21843..22160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1069.613.1

>prot_Ecto-sp9_F_contig1069.613.1 ID=prot_Ecto-sp9_F_contig1069.613.1|Name=mRNA_Ecto-sp9_F_contig1069.613.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
ASLTRVTCDLICTGGAFGDRCLVARILIFDCERNVFADIRLYYTGTTTLR
AVAARIVKLICTETSLWWYYLAFCLYVDRTLHLVNHEVLDRKSLLRCCVC
SLLTM*
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mRNA from alignment at Ecto-sp9_F_contig1069:21843..22314+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1069.613.1 ID=mRNA_Ecto-sp9_F_contig1069.613.1|Name=mRNA_Ecto-sp9_F_contig1069.613.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=472bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1069:21843..22314+ (Ectocarpus species9 EcSCA_722f female)
GCATCACTCACTCGGGTGACCTGCGACCTCATCTGTACTGGAGGAGCCTT
CGGTGACCGTTGCCTTGTTGCACGCATTCTTATTTTTGACTGCGAAAGAA
ACGTTTTTGCCGACATCAGATTGTATTACACGGGAACGACAACACTGAGA
GCTGTGGCTGCTCGCATAGTAAAGTTGATATGTACGGAGACGAGTCTATG
GTGGTATTATCTCGCGTTTTGTCTATATGTAGACAGGACTCTTCATCTCG
TCAACCATGAGGTATTGGATCGTAAATCTCTACTACGCTGCTGTGTCTGC
TCACTGCTCACCATGTAAAATAACAATTAAGTGTGGATGCCTGTGTGGGG
TGCTCGGCAGAGTATTGCTTACGGGGCTGTACGGGGGTTACGCGGATGAC
ATGTGTTGATGATCATGCCGCGCGGGGATCGTCTTGCCTTATCACTCTCT
ACGCAATGAAGGTCTTCTTTCT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1069:21843..22314+

>mRNA_Ecto-sp9_F_contig1069.613.1 ID=mRNA_Ecto-sp9_F_contig1069.613.1|Name=mRNA_Ecto-sp9_F_contig1069.613.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1069:21843..22314+ (Ectocarpus species9 EcSCA_722f female)
GCATCACTCACTCGGGTGACCTGCGACCTCATCTGTACTGGAGGAGCCTT
CGGTGACCGTTGCCTTGTTGCACGCATTCTTATTTTTGACTGCGAAAGAA
ACGTTTTTGCCGACATCAGATTGTATTACACGGGAACGACAACACTGAGA
GCTGTGGCTGCTCGCATAGTAAAGTTGATATGTACGGAGACGAGTCTATG
GTGGTATTATCTCGCGTTTTGTCTATATGTAGACAGGACTCTTCATCTCG
TCAACCATGAGGTATTGGATCGTAAATCTCTACTACGCTGCTGTGTCTGC
TCACTGCTCACCATGTAAGCATCACTCACTCGGGTGACCTGCGACCTCAT
CTGTACTGGAGGAGCCTTCGGTGACCGTTGCCTTGTTGCACGCATTCTTA
TTTTTGACTGCGAAAGAAACGTTTTTGCCGACATCAGATTGTATTACACG
GGAACGACAACACTGAGAGCTGTGGCTGCTCGCATAGTAAAGTTGATATG
TACGGAGACGAGTCTATGGTGGTATTATCTCGCGTTTTGTCTATATGTAG
ACAGGACTCTTCATCTCGTCAACCATGAGGTATTGGATCGTAAATCTCTA
CTACGCTGCTGTGTCTGCTCACTGCTCACCATGTAA
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