mRNA_Ecto-sp9_F_contig10689.610.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI36_ECTSI) HSP 1 Score: 255 bits (652), Expect = 7.250e-80 Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
FCQFAFPGQCSVLGVYQPELP+GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNS+RKG EHNVPYLAKYCFMSSYVTTLL GYGFPAEEHIHFVDEVGGYKV
Sbjct: 352 FCQFAFPGQCSVLGVYQPELPQGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSLRKGREHNVPYLAKYCFMSSYVTTLLGGGYGFPAEEHIHFVDEVGGYKV 473
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK1_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.060e-78 Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKVRA 372
FCQ AFPGQCS+LGVYQPELP+GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIV EGKRVC MS EELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLL DGYGFPAEE IHFVDEVGGYK A
Sbjct: 300 FCQSAFPGQCSLLGVYQPELPQGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVSEGKRVCAMSHEELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLRDGYGFPAEERIHFVDEVGGYKFPA 423
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV38_PHATC) HSP 1 Score: 96.3 bits (238), Expect = 1.360e-20 Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELPK--GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
+C FA G CS+ G+YQP+LP+ G G F FS YY +WQFL L ++ ++A++ C ++ + L ++ + E+ L YCF S+YV LL +GYGF + I V + G+KV
Sbjct: 434 WCDFAHQGDCSLAGIYQPDLPRQENGNFGEFLAFSNYYHVWQFLSLPDTASLAQLYNATSFACSLNHDNLVSFAAGSNIDENE---LDSYCFRSTYVFQLLHNGYGFGMNDTIRAVRVIDGHKV 554
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Hypothetical (protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWR8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.970e-18 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELP-KGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
+C F+ G CS+ GVYQP+LP K G F FS Y+ +W+FL L E T+ ++ + C ++ ++L + + + L YCF S+YV LL +GYGF + I + + G KV
Sbjct: 457 WCNFSHKGDCSLAGVYQPQLPTKSESFGEFIAFSNYHHVWKFLHLKERATIQQLYDATQHACSLNHDDLKVFARGKVEDDQ----LDSYCFRSAYVFQLLHNGYGFQMNDTIRVSNVINGKKV 575
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Nucleoside (phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.340e-15 Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDL-DESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
+C++A+ G+CS+ G+YQPELP FY FSG+ + + ++L E T+A+ + VC + + L N R G + C+ +Y+ TLL+DGYGF + ++ V ++ GYKV
Sbjct: 398 WCEYAYNGECSMGGIYQPELPAAANRV-FYAFSGFRRAFDMMNLPSERLTLAQYREGAREVCSLDMQALLDRNE-RAGKPLLPNLVRAACYTVTYMVTLLADGYGFKDDFELNVVAKIDGYKV 518
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7S3X2_PHATC) HSP 1 Score: 73.2 bits (178), Expect = 1.650e-12 Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 1 FCQFAFPGQCSVLGVYQPELPKGG-EHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPY------LAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
+C F+ CS G+YQP LP + G F S +Y +W FL L+E +TV E++ +G HN P L +YCF +++V L G+GFP + HI VD+V G K+
Sbjct: 389 WCNFSHDRDCSFAGIYQPPLPINEYDFGEFIATSNFYHVWDFLGLEERSTVDEVL---------------------EGARHNRPKPLSDDDLIQYCFRATFVAELFR-GWGFPGDYHITSVDQVNGLKL 495
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=2 Tax=Testudinoidea TaxID=8486 RepID=A0A8C0GV06_CHEAB) HSP 1 Score: 62.4 bits (150), Expect = 9.170e-9 Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKVRACSPVFL 390
C GVYQP HG+F+ FSG+Y ++ FL+L ++++ + C +E+ + N L YC S+Y+ TLL GY F + +IHF +VG + C ++
Sbjct: 332 CGFNGVYQPP-----GHGQFFAFSGFYSVFHFLNLTSGHPLSDVSATIEHFCAKDWKEVQMVDPGM-----NKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHRQVGHLPGKVCCAAWV 444
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Ectonucleoside (triphosphate diphosphohydrolase 8 n=17 Tax=Durocryptodira TaxID=1579337 RepID=A0A452I422_9SAUR) HSP 1 Score: 61.2 bits (147), Expect = 2.460e-8 Identity = 36/115 (31.30%), Postives = 55/115 (47.83%), Query Frame = 1
Query: 28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKV 366
C GVYQP EHG+F+ FSG+Y ++ FL+L ++++ + C +E+ + N L YC S+Y+ TLL GY F + +IHF +V V
Sbjct: 455 CGFNGVYQPP-----EHGQFFAFSGFYSVFHFLNLTSGHPLSDVSATIEHFCAKDWKEVQMVDPGM-----NKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHRQVAAVDV 559
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Ectonucleoside (triphosphate diphosphohydrolase 8-like n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674IUE2_TERCA) HSP 1 Score: 59.7 bits (143), Expect = 6.900e-8 Identity = 36/115 (31.30%), Postives = 54/115 (46.96%), Query Frame = 1
Query: 28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKV 366
C GVYQP EHG F+ FSG+Y ++ FL+L ++++ + C +E+ + N L YC S+Y+ TLL GY F + +IHF +V V
Sbjct: 156 CGFNGVYQPP-----EHGHFFAFSGFYSVFHFLNLTSEHPLSDVSATIEHFCAKDWKEVQMVDP-----GVNKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHWQVAAVDV 260
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DAG2_CAFRO) HSP 1 Score: 59.7 bits (143), Expect = 8.100e-8 Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 1
Query: 13 AFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDES-TTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE 324
A P CS+ GVYQP + +F FSG+ +W FL L + TT A++ CG S E N YLA +C ++ TLL+ GYG PA+
Sbjct: 342 ASPLTCSIGGVYQPPV----NVTKFVAFSGFSYIWDFLKLAPAGTTPAQLAAAATTFCGTSWEHAKQQNP-----SEPEKYLAAFCATATLSHTLLTTGYGIPAQ 437 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10689.610.1 >prot_Ecto-sp9_F_contig10689.610.1 ID=prot_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=131bp FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVback to top mRNA from alignment at Ecto-sp9_F_contig10689:629..1892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10689.610.1 ID=mRNA_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1264bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10689:629..1892- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10689:629..1892- >mRNA_Ecto-sp9_F_contig10689.610.1 ID=mRNA_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10689:629..1892- (Ectocarpus species9 EcSCA_722f female)back to top |