mRNA_Ecto-sp9_F_contig1067.602.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 223 bits (567), Expect = 2.990e-64 Identity = 143/174 (82.18%), Postives = 146/174 (83.91%), Query Frame = 1
Query: 1 AECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------EPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEP 450
AECGGCGGSDCDALGGGLGA+NCCESDIVERGELCSIA EAPCYLEEPA EPTXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVE GELCSIA EAPCY++EP
Sbjct: 540 AECGGCGGSDCDALGGGLGADNCCESDIVERGELCSIALEAPCYLEEPAPEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVEHGELCSIALEAPCYIDEP 713
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.260e-60 Identity = 130/149 (87.25%), Postives = 135/149 (90.60%), Query Frame = 1
Query: 1 AECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEE 447
AECGGCGGSDCD G GLGAENCCESDIV+ GELCSIA EAPCYL+EP EPT XXXXXXXXXXXXXXXXXXXXXXXXXXX PTDTCSNG PGIQSGNACCLAECG CGGSDCDA GGGLGA+NCCESDIVE GELCSIA EAPCYL++
Sbjct: 661 AECGGCGGSDCDQFGDGLGAENCCESDIVDYGELCSIALEAPCYLDEPTPEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTDTCSNGMPGIQSGNACCLAECGACGGSDCDAFGGGLGADNCCESDIVEHGELCSIALEAPCYLDD 809
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 165 bits (417), Expect = 7.660e-49 Identity = 85/153 (55.56%), Postives = 95/153 (62.09%), Query Frame = 1
Query: 1 AECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPATE 459
AECGGCGGS C LGGGLG NCCE +I E GELCSI EAPC ++ A P+ EPTD CSNGFPGIQSG +CCLAECG CGG C GGGLGA+ CCESDI E GELCSIA APCY+++ A +
Sbjct: 51 AECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVT------------------EPTDVCSNGFPGIQSGVSCCLAECGECGGRGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDDGAAD 185
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.150e-32 Identity = 88/146 (60.27%), Postives = 103/146 (70.55%), Query Frame = 1
Query: 16 CGGSDCDALG-GGLGAENCCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEP 450
CGG+ C +G GAE+CC+SD++ G CS++ EAPC L+ PATE XXXXXXXXXXXXXXXXXXXX D CSNG PGIQSG++CCLAECG CGGS C GGGLG +NCC I E GELCS+A APCY++ P
Sbjct: 367 CGGAGCATVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDAPATE-MPAMAPTPEXXXXXXXXXXXXXXXXXXXXXXGDVCSNGIPGIQSGDSCCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAP 511
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 2.540e-24 Identity = 83/171 (48.54%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 16 CGGSDCDALG-GGLGAENCCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPT--------------------------DTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEE 447
CGG C +G GAE+CCE D+ G CS++ EAPC L++ PT XXXXXXXXXXXXXXXXXXX P D CSNGFPGIQSG++CC AEC CGG C GGGLG +NCC I E GELCS A APCY+++
Sbjct: 435 CGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDD-VLSPTETPXXXXXXXXXXXXXXXXXXXTPEPTAAPATEMPAMAXXXXXXXXXXXXXXXXXXXDVCSNGFPGIQSGDSCCHAECEACGGFGCAEFGGGLGEDNCCAVRIEEYGELCSTALAAPCYVDD 604
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.730e-24 Identity = 73/126 (57.94%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 67 CCESDIVERGELCSIAREAPCYLEEPATEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLE 444
CC IVE +C I APC L XXXXXXXXXXXXXXXX TD CSNG PG+QSG +CCLAECGGCGGS C LGGGLG NCCE +I E GELCSI EAPC ++
Sbjct: 420 CCADTIVEDDAMCDIFGSAPCVL-------------------GXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVID 526
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.420e-23 Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 253 DTCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLE 444
D CSNGF GIQSGNACCLAECG CGG C GGGLGA+ CCESDI E GELCSIA APCY++
Sbjct: 444 DMCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYID 507
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 5.790e-13 Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 259 CSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPAT 456
CSNGFPGI+ ACC+++CG CGGS C + GL ++CC +I+++G CS APC+L+ +T
Sbjct: 21 CSNGFPGIEKSGACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDST 86
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 6.320e-12 Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 256 TCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPAT 456
TCSNG PG Q G ACCL CG CGG C ++ G GA +CC S I+ +C APC + PAT
Sbjct: 6 TCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII--PAT 70
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 7.210e-10 Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 277 GIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLE 444
GI +G ACC EC CGG C GGGL ++CC S+I E G LCS+A +APC+++
Sbjct: 77 GILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVD 132 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1067.602.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1067.602.1 >prot_Ecto-sp9_F_contig1067.602.1 ID=prot_Ecto-sp9_F_contig1067.602.1|Name=mRNA_Ecto-sp9_F_contig1067.602.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=166bp AECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIAREAPCYLEEPATback to top mRNA from alignment at Ecto-sp9_F_contig1067:24484..25841+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1067.602.1 ID=mRNA_Ecto-sp9_F_contig1067.602.1|Name=mRNA_Ecto-sp9_F_contig1067.602.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1358bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:24484..25841+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1067:24484..25841+ >mRNA_Ecto-sp9_F_contig1067.602.1 ID=mRNA_Ecto-sp9_F_contig1067.602.1|Name=mRNA_Ecto-sp9_F_contig1067.602.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:24484..25841+ (Ectocarpus species9 EcSCA_722f female)back to top |