mRNA_Ecto-sp9_F_contig1067.601.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1067.601.1
Unique NamemRNA_Ecto-sp9_F_contig1067.601.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.070e-37
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEEPTP 201
            +CSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGA+NCCESHIVEHGELCSIAREAPCY+EEPTP
Sbjct:  265 VCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGADNCCESHIVEHGELCSIAREAPCYVEEPTP 331
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.760e-34
Identity = 114/155 (73.55%), Postives = 118/155 (76.13%), Query Frame = 1 
Query:    4 CSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDVCSNGFPGIESGNA 468
            CSNGFPGIQSGNACCLAECGGCGGSDCD  G GLGAENCCES IVEHGELCSIA EAPCY++EPTP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            EPTD+CSNGFPGI+SGNA
Sbjct:  429 CSNGFPGIQSGNACCLAECGGCGGSDCDQFGDGLGAENCCESDIVEHGELCSIALEAPCYLDEPTPEPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------EPTDLCSNGFPGIQSGNA 555
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.460e-24
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEE 192
            +CSNGFPGIQSG +CCLAECG CGG  C   GGGLGA+ CCES I E+GELCSIA  APCYI++
Sbjct:  118 VCSNGFPGIQSGVSCCLAECGECGGRGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDD 181
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.400e-23
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEEPT 198
            MCSNGF GIQSGNACCLAECG CGG  C   GGGLGA+ CCES I E+GELCSIA  APCYI+  T
Sbjct:  445 MCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDGET 510
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.830e-22
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEEPTP 201
            +CSNG PGIQSG++CCLAECG CGGS C   GGGLG +NCC   I E+GELCS+A  APCY++ P P
Sbjct:  447 VCSNGIPGIQSGDSCCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAPPP 513
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.380e-21
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIE 189
            +CSNG PG+QSG +CCLAECGGCGGS C  LGGGLG  NCCE  I E GELCSI  EAPC I+
Sbjct:  464 VCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVID 526
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.800e-19
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEE-----PTP 201
            +CSNGFPGIQSG++CC AEC  CGG  C   GGGLG +NCC   I E+GELCS A  APCY+++     PTP
Sbjct:  541 VCSNGFPGIQSGDSCCHAECEACGGFGCAEFGGGLGEDNCCAVRIEEYGELCSTALAAPCYVDDGSAPPPTP 612
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.710e-12
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 CSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIE 189
            CSNGFPGI+   ACC+++CG CGGS C +   GL  ++CC  +I++ G  CS    APC+++
Sbjct:   21 CSNGFPGIEKSGACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLD 82
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BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.370e-11
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   22 GIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIE 189
            GI +G ACC  EC  CGG  C   GGGL  ++CC S+I EHG LCS+A +APC+++
Sbjct:   77 GILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVD 132
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.210e-11
Identity = 33/69 (47.83%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    4 CSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGELCSIAREAPCYIEE---PTP 201
            CSNG PG Q G ACCL  CG CGG  C ++ G  GA +CC S I+    +C     APC I     PTP
Sbjct:    7 CSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTP 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1067.601.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
WSC3.070e-3795.52domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.760e-3473.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.460e-2471.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.400e-2374.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.830e-2265.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.380e-2171.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-1665.800e-1959.72n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Mannuronan3.710e-1246.77C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
Endo3.370e-1153.57alpha-1,4 polygalactosaminidase precusor n=1 Tax=E... [more]
Uncharacterized5.210e-1147.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1067contigEcto-sp9_F_contig1067:21840..23061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue8.2e-31
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1067.601.1prot_Ecto-sp9_F_contig1067.601.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1067 21840..23061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.7196417-CDS-Ecto-sp9_F_contig1067:21839..220291622928284.7196417-CDS-Ecto-sp9_F_contig1067:21839..22029Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 21840..22029 +
1692277820.9712071-CDS-Ecto-sp9_F_contig1067:21839..220291692277820.9712071-CDS-Ecto-sp9_F_contig1067:21839..22029Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 21840..22029 +
1622928284.733091-CDS-Ecto-sp9_F_contig1067:22354..225881622928284.733091-CDS-Ecto-sp9_F_contig1067:22354..22588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 22355..22588 +
1692277820.982929-CDS-Ecto-sp9_F_contig1067:22354..225881692277820.982929-CDS-Ecto-sp9_F_contig1067:22354..22588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 22355..22588 +
1622928284.7461379-CDS-Ecto-sp9_F_contig1067:23017..230611622928284.7461379-CDS-Ecto-sp9_F_contig1067:23017..23061Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 23018..23061 +
1692277820.9919412-CDS-Ecto-sp9_F_contig1067:23017..230611692277820.9919412-CDS-Ecto-sp9_F_contig1067:23017..23061Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1067 23018..23061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1067.601.1

>prot_Ecto-sp9_F_contig1067.601.1 ID=prot_Ecto-sp9_F_contig1067.601.1|Name=mRNA_Ecto-sp9_F_contig1067.601.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=156bp
MCSNGFPGIQSGNACCLAECGGCGGSDCDALGGGLGAENCCESHIVEHGE
LCSIAREAPCYIEEPTPEPTPEPTPEPTPEPTAEPTAEPTPEPTPEPTPE
PTPEPTAEPTPEPTAEPTAEPTAELTPEPTPEPTPEPTEPTDVCSNGFPG
IESGNA
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mRNA from alignment at Ecto-sp9_F_contig1067:21840..23061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1067.601.1 ID=mRNA_Ecto-sp9_F_contig1067.601.1|Name=mRNA_Ecto-sp9_F_contig1067.601.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1222bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:21840..23061+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCTCCAACGGGTTCCCCGGTATCCAGTCAGGAAACGCTTGCTGTCT
CGCGGAGTGCGGTGGGTGCGGCGGATCGGACTGCGATGCGCTCGGCGGCG
GTCTCGGTGCGGAGAACTGCTGCGAGAGCCACATCGTGGAACACGGCGAG
CTCTGCTCCATCGCGCGCGAGGCACCGTGCTACATTGAGGGTGAGGTGAA
CGGAGTTGTTGGTGTTTGTCGTTTCCGACAGCGTTGTGATGAAGTTTCTC
ATCCTGCGGCACAGGGGCGTTTTTTCGTCGCCGACTTTGTAGGTTTTTGT
TTGTGGGTGGGTGTCTCGCATGATTCCCCTATCGCTCGGCCAACTTGCTG
CCAGGTCGCAAATAGAGTCGTCCACACGAAATCGGACCATTGATTTAGAT
AATACTTTTGTACGCCCGCCAGCGCACAATATTTTCCTGACTTCCGTGGT
TCGTCGGTGCCGCCACTCATTTCGTGATGCCCCTGCGCCTTCGCCGGTCG
CCTTGCCTACCCCAGAGCCCACTCCCGAGCCGACGCCCGAGCCTACGCCC
GAGCCTACCCCCGAGCCAACTGCGGAACCTACTGCAGAGCCTACTCCTGA
GCCGACTCCGGAGCCTACGCCCGAGCCAACTCCGGAACCTACTGCCGAGC
CTACGCCCGAGCCAACTGCGGAACCTACTGCAGAGCCTACTGCTGAGCTG
ACTCCGGAGCCTACTCCAGAGCCTACGCCCGAGCCTACCGAGCCCACCGG
TGAGAAAACTGTCGCGTGATTTCATGGTTGATGACTCAGCAATCAAAAGT
AAGACGTGCCCGTTTTTGGTTAAGGCTGACCTGATCAGTGGAAGATTTTT
TCCGTGCACCGTCGTCACCTGAAGCCGAAGTCTTGCTTTCAATGAAATTT
ATCATCTGGCGGTATTGATGGTGCCGTCCCCACCCGTGGTAGCCTTGTGC
GTGGGGGTAGGCCCTCTTGGCGGGTCTGCTTGCTGGTGGTTGGTAGTTGT
TGGGGCGACTGGCAGCGGACCCTGTTTTGGACCGACGACCATTTTCTCGG
CACCTGACGGGGTCCCTTAGACCCCAGACTCGAGAGCCTTGTTCGTGATT
GTTCTTGAACGGTCCAAACGCGTTCGTCACGATAAAAAAACTCGCCCGTT
CTTGCTGTACGTCTCTCCCTGCCGGCAGACGTGTGCTCCAACGGGTTCCC
CGGTATCGAGTCAGGAAACGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1067:21840..23061+

>mRNA_Ecto-sp9_F_contig1067.601.1 ID=mRNA_Ecto-sp9_F_contig1067.601.1|Name=mRNA_Ecto-sp9_F_contig1067.601.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:21840..23061+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCTCCAACGGGTTCCCCGGTATCCAGTCAGGAAACGCTTGCTGTCT
CGCGGAGTGCGGTGGGTGCGGCGGATCGGACTGCGATGCGCTCGGCGGCG
GTCTCGGTGCGGAGAACTGCTGCGAGAGCCACATCGTGGAACACGGCGAG
CTCTGCTCCATCGCGCGCGAGGCACCGTGCTACATTGAGGATGTGCTCCA
ACGGGTTCCCCGGTATCCAGTCAGGAAACGCTTGCTGTCTCGCGGAGTGC
GGTGGGTGCGGCGGATCGGACTGCGATGCGCTCGGCGGCGGTCTCGGTGC
GGAGAACTGCTGCGAGAGCCACATCGTGGAACACGGCGAGCTCTGCTCCA
TCGCGCGCGAGGCACCGTGCTACATTGAGGAGCCCACTCCCGAGCCGACG
CCCGAGCCTACGCCCGAGCCTACCCCCGAGCCAACTGCGGAACCTACTGC
AGAGCCTACTCCTGAGCCGACTCCGGAGCCTACGCCCGAGCCAACTCCGG
AACCTACTGCCGAGCCTACGCCCGAGCCAACTGCGGAACCTACTGCAGAG
CCTACTGCTGAGCTGACTCCGGAGCCTACTCCAGAGCCTACGCCCGAGCC
TACCGAGCCCACCGAGCCCACTCCCGAGCCGACGCCCGAGCCTACGCCCG
AGCCTACCCCCGAGCCAACTGCGGAACCTACTGCAGAGCCTACTCCTGAG
CCGACTCCGGAGCCTACGCCCGAGCCAACTCCGGAACCTACTGCCGAGCC
TACGCCCGAGCCAACTGCGGAACCTACTGCAGAGCCTACTGCTGAGCTGA
CTCCGGAGCCTACTCCAGAGCCTACGCCCGAGCCTACCGAGCCCACCGAC
GTGTGCTCCAACGGGTTCCCCGGTATCGAGTCAGGAAACGCGACGTGTGC
TCCAACGGGTTCCCCGGTATCGAGTCAGGAAACGCG
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