mRNA_Ecto-sp9_F_contig10.53.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I7_ECTSI) HSP 1 Score: 742 bits (1916), Expect = 3.060e-270 Identity = 376/382 (98.43%), Postives = 380/382 (99.48%), Query Frame = 1
Query: 16 MSLSACRHALRQRGSIVLLRHSSTAAASKRKPIAVIEPAAGTISDARHVHNSSARWRQQAAAGQGEEGWTGGDGGERGGHAGARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRRRGPAAFPTAKPPGL 1161
MSLSACRHALRQRGSIVLLRHSSTAAASKRKPIAVI+ AAGTISDARHVHNSSARW+QQAAAGQGE+GWTGGDGGERGGHAGARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKG QWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRRRGPAAFPTAKPPG+
Sbjct: 1 MSLSACRHALRQRGSIVLLRHSSTAAASKRKPIAVIKSAAGTISDARHVHNSSARWQQQAAAGQGEKGWTGGDGGERGGHAGARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGPQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRRRGPAAFPTAKPPGI 382
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV33_9PHAE) HSP 1 Score: 642 bits (1655), Expect = 1.060e-230 Identity = 331/368 (89.95%), Postives = 339/368 (92.12%), Query Frame = 1
Query: 16 MSLSACRHALRQRGSIVLLRHSSTAAASKRKPIAVIEPAAGTISDARHVHNSSARWRQQAAAGQGEEGWTGGDGGERGGHAGARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLV-----------------GPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATW 1068
MSLSACRHALR RGSI+LLRHSSTAAA K+KPIAVI PA GTISDARH +NSSARW+QQAAAGQGEEGWTGGDGGERGGHAGARILGI VFSSLVGATACLGTWQAMRYSWKLDLIESR+A+ME EPVDLPEGLEGA LATMMDVLDKEADGKASKGPNGETLGGSEEGKGLL SLEGRRLRVTGVFDHGKEVLV GPRGAPPGMKATSGPSSMAPSPMGDFV+TPLKRGDGSVVLVNRGWV RSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLG+HGA EGVQSVPILMEAVGEEDGDKKTMPMAK PKHFGDFYVTPQTHLMYSATW
Sbjct: 1 MSLSACRHALRHRGSIILLRHSSTAAALKQKPIAVITPAEGTISDARHAYNSSARWQQQAAAGQGEEGWTGGDGGERGGHAGARILGIAVFSSLVGATACLGTWQAMRYSWKLDLIESRRAKMELEPVDLPEGLEGAALATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLGSLEGRRLRVTGVFDHGKEVLVAKQRITSVFSATAAYFPGPRGAPPGMKATSGPSSMAPSPMGDFVYTPLKRGDGSVVLVNRGWVSRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGRHGAGEGVQSVPILMEAVGEEDGDKKTMPMAKTPKHFGDFYVTPQTHLMYSATW 368
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ9_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.160e-67 Identity = 129/289 (44.64%), Postives = 171/289 (59.17%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSS--MAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGE--EDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRR 1119
R GI +F++LVG+T LGTWQA RY WK+DL+E + ++ EP DLP AT DV S EG L+ G R+R GVFDH KEVLVGPR AP ++T GP + MA +P G FV+TPL+R DG+ +LVNRGWVP++ W RPEG V ++GV++ EK + FSP ++P R L+W + L AAGL + +P+LM+A E E + P+ K+ FYVTPQTHLMY+ATWY+LAA A+T+ARFR+
Sbjct: 42 RGAGIALFAALVGSTVGLGTWQAFRYQWKVDLVEQSQKQLSSEPTDLPSD------ATQKDV--------------------SREGSTLV----GTRVRARGVFDHSKEVLVGPRAAPKSQESTKGPGAGGMATNPQGYFVYTPLRRQDGTAILVNRGWVPQTAS-SWGRPEGVVEVLGVVRQGEKPNRFSPKHEPGMRKLMWVDLPTLALAAGLAANTLS--ADKLPVLMDAALEDSEPFSRGESPVPKRISDIDQFYVTPQTHLMYAATWYSLAAFATAITYARFRK 297
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F0L0_9EUKA) HSP 1 Score: 170 bits (430), Expect = 5.840e-46 Identity = 110/306 (35.95%), Postives = 158/306 (51.63%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQ-------------------WSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAV---GEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFR 1116
R++GIV+FSSLVG L +WQ RY+WKL L+E R+ R+ E L E + A LA + +E+ +E E RR+ V G FDH +++L+GPR APPG K P SP G + TPL+ DG+V+LVNRGWVPR + +S+P G + GVLK E+++ ++ +NKPE + +W + A + G S P+L+ A GE+ K PM + + F DFYV+P THL+Y++TW AL+ AG +T+ RFR
Sbjct: 70 RVVGIVLFSSLVGYVTYLCSWQMKRYNWKLSLVELRRERVTGEVRPLTELVSAADLADVQR---------------------TEQLAAAVEEEEFRRVAVRGEFDHTQQMLLGPRSAPPGAKQHGAPGG---SPSGWDIVTPLRCEDGTVILVNRGWVPRDSTVPARDPVTGKPNGHAFGVPAAFSQPRGAQEVHGVLKKGEQKNKYA-ENKPEEQRYVWLDLATMASEGG-----------SAPLLVVAAAQPGEQPDVKPEWPMTRPLESFLDFYVSPTTHLVYASTWGALSVAGAFMTFRRFR 339
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BT23_SAPPC) HSP 1 Score: 146 bits (369), Expect = 8.660e-38 Identity = 100/298 (33.56%), Postives = 145/298 (48.66%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSK-----GLQWSRPEGEVT-------MVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEED-GDKKTMPMAKKPK-HFGDFYVTPQTHLMYSATWYALAAAGCALTWARFR 1116
++LGI +FSS+V TA +G WQ+ RY WK+DLIE+R+ R++ PV LP + A++ N E LE R+L V G F GK + PR P M + G S G F++ +R +G+ V+VNRGW+P+ + L SRP EV +VGV+ E+ TFSP N+P RH W + L A +G+ + PIL+E +E K + KK K + +FY+TP H MY+ W++LA G + + RFR
Sbjct: 5 QLLGIGIFSSIVAGTASMGVWQSNRYFWKVDLIETRRQRLQEAPVPLPNDI-------------------AAENVNAE--------------LEHRQLAVEGHFVPGKTFYLYPRSPPIDMSESKGKVSS-----GGFIYDLFERANGTSVIVNRGWLPKDEMEKHMALTTSRPPEEVNAAPATVQLVGVMVQGEEEKTFSPPNEPTKRHFFWLNQPELAHAM-MGK------TEYTPILLEEFNDEPTAAKNAQELVKKHKDQYLEFYMTPWKHAMYAGIWFSLALMGTGMVFYRFR 257
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JMS6_9EUKA) HSP 1 Score: 145 bits (367), Expect = 2.480e-37 Identity = 96/286 (33.57%), Postives = 143/286 (50.00%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEE-DGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRR 1119
R +G +F+ T CL WQ R WKL L++ R AR++ PV L G+ L + +L E+LE R++ + GVF+H K++L+GPR APP ++ + AP+ G V TP+ DG VLVNRGWV R + + S P GEV ++GVL+A E + ++ ++ R +W + AL +A S PIL+ + + + P+ + F DFYV P THL+Y+ATW +L+ AG LT+ RF R
Sbjct: 43 RRVGAAIFTCASVGTGCLSCWQLQRRQWKLALVDERSARLQAAPVSL-----GSLLPASVALLP--------------------------EALEFRQVELFGVFEHEKQILLGPRSAPPSSGGSATVPTGAPTQSGWDVITPMVCSDGRRVLVNRGWVARDQVDRLSLPAGEVGVIGVLRAGEAGNRYARNDVANGR-FVWLDLDALAEATS-----------SSPILVFSQKDALEAKPNAWPLPRPHASFVDFYVQPTTHLVYAATWASLSIAGACLTYMRFVR 285
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQS9_9STRA) HSP 1 Score: 144 bits (362), Expect = 9.580e-37 Identity = 96/293 (32.76%), Postives = 143/293 (48.81%), Query Frame = 1
Query: 256 AGARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEG-RRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETR--HLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRRRG 1125
AG I G++ F + T LGTWQ RY K+D +E+R+ + +P P G L ++E ++ + G FDH +E+ V RG P G +A P+GD+V PL+ DG+VV VNRGWVPR+ W+RPEGEV +VGV+ EK++T+SP N PE L W E+ + + AG+ Q++ + ++A+ E D +++ + K F F V+P+TH Y+ATW+ L G +T R R RG
Sbjct: 16 AGLGIGGMLFFGGITLGTGALGTWQCKRYFEKVDEVEARRITLASQPAAAPTGA-------------------------------------ALRAVEPFSKVAIRGSFDHAREMRVINRGPPESRAGLQG--GLATGPIGDYVLVPLRLRDGTVVFVNRGWVPRNTAT-WARPEGEVEVVGVVTQMEKQNTYSPPNSPEKDGGKLYWIEEGKMKEYAGISD------AQAI-VYLQAMSEGAADDESL-VRKLVADFMRFAVSPETHAGYAATWFGLCFFGIIMTVMRARGRG 260
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7Q0_9EUKA) HSP 1 Score: 144 bits (362), Expect = 1.580e-36 Identity = 100/294 (34.01%), Postives = 135/294 (45.92%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGE----EDGDK-----KTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRR 1119
R LG +FS L G TACL WQ RY K+ ++E RK ++ P L E E G+ E R+ V G FDH ++VL+GPR APPG + P+ AP+ G V TPL DGS VLVNRGWVPR +P G+ + GVLK ++ + + N P +W + A+L +++G S PIL+ A E DG +T P + FYV P TH++Y+ATW +L AG +T RF R
Sbjct: 43 RRLGAALFSGLCGTTACLCGWQVKRYGDKVQMVEDRKTALQAAPRPLREVY-------------------------------PELSAGISAGDEYTRVSVEGTFDHARQVLLGPRSAPPGSDKGNSPAG-APAQSGWDVVTPLACADGSRVLVNRGWVPRDATAAIDQPTGQQRIEGVLKQGDRENKYG-HNDPAAGRYVWLDLASLARSSG-----------SSPILVMAAAEGSDASDGRAASSVHRTWPRVRPLSSLMSFYVEPHTHIVYAATWASLTVAGAVITVKRFVR 292
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X005_9SPIT) HSP 1 Score: 142 bits (359), Expect = 3.210e-36 Identity = 100/287 (34.84%), Postives = 136/287 (47.39%), Query Frame = 1
Query: 265 RILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSM--APSPMGDFVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRR 1119
R G V+FSSL T L WQ RY WK +LIE R A + P L + LA + E LE RR+ +G FDH K+VL+GPR AP GM++ G + AP+ G V TPL DGSV+LVNRGWVPR + S+P G + G+L+ E + F+ N P+ R ++ + AL + G Q ++ + D P+ + F +FYV P THL+Y+ATW +L A G LT+ RF R
Sbjct: 36 RRTGTVLFSSLSLGTGALAGWQLHRYQWKTELIERRTAVLSSPPQPLR-----SVLAADAGTVPPE--------------------------LEYRRVHCSGTFDHSKQVLLGPRSAPAGMESAGGGRAPPGAPTASGWDVVTPLCCEDGSVLLVNRGWVPRDQVQAISKPMGSQRVEGILRCGEAGNRFA-QNDPQHRRFVFLDVQALAELNGSSQ----------VLIYQTRETGDATDSQWPVLRPTTSFLNFYVQPSTHLVYAATWSSLCALGGVLTYLRFLR 280
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Match: SURF1-like (protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UW59_DIALT) HSP 1 Score: 136 bits (342), Expect = 6.510e-34 Identity = 99/292 (33.90%), Postives = 127/292 (43.49%), Query Frame = 1
Query: 259 GARILGIVVFSSLVGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEGATLATMMDVLDKEADGKASKGPNGETLGGSEEGKGLLESLEGRRLRVTGVFDHGKEVLVGPRGAPPGMKATSGPSSMAPSPMGD-----FVHTPLKRGDGSVVLVNRGWVPRSKGLQWSRPEGEVTMVGVLKAAEKRSTFSPDNKPETRHLLWAEKAALLQAAGLGQHGAEEGVQSVPILMEAVGEEDGDKKTMPMAKKPKHFGDFYVTPQTHLMYSATWYALAAAGCALTWARFRR 1119
G+ LG VF S+V T L WQA RY WK DL+ESRK + P L +E E R+ V+G DH ++LVGPR S P+ P+P GD V TPL G+ VLVNRGWVPR K +P GEV + GV++AAE+ +F+ N PE W + A + A L +VP+L+EA D K P + F V P HL+Y+ TW L AA A+ RFRR
Sbjct: 27 GSDTLGRAVFGSMVLGTGGLAAWQAQRYRWKCDLVESRKRVLAASPRALEAVVEHEPSPP-----------------------------------EFTRVVVSGRLDHEHQMLVGPR---------SPPAGSPPAPSGDVHTGWLVLTPL-HGERVSVLVNRGWVPRDKVAAIEQPRGEVCVEGVVRAAEEPGSFALPNDPERGSYFWIDVAGMALDAEL--------FDAVPLLVEATARSDDPKGVWPRPRSASSLVSFRVEPPMHLVYAGTWATLCAASAAMVALRFRR 265 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10.53.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10.53.1 >prot_Ecto-sp9_F_contig10.53.1 ID=prot_Ecto-sp9_F_contig10.53.1|Name=mRNA_Ecto-sp9_F_contig10.53.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=383bp MSLSACRHALRQRGSIVLLRHSSTAAASKRKPIAVIEPAAGTISDARHVHback to top mRNA from alignment at Ecto-sp9_F_contig10:64660..69485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10.53.1 ID=mRNA_Ecto-sp9_F_contig10.53.1|Name=mRNA_Ecto-sp9_F_contig10.53.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4826bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10:64660..69485+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10:64660..69485+ >mRNA_Ecto-sp9_F_contig10.53.1 ID=mRNA_Ecto-sp9_F_contig10.53.1|Name=mRNA_Ecto-sp9_F_contig10.53.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2298bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10:64660..69485+ (Ectocarpus species9 EcSCA_722f female)back to top |