prot_Ecto-sp9_F_contig10542.503.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10542.503.1
Unique Nameprot_Ecto-sp9_F_contig10542.503.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length85
Homology
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 9.350e-42
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 84
            +GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVR+         ALHRCSLIRGQMFFLTTNL
Sbjct:  632 TGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALPELRGALHRCSLIRGQMFFLTTNL 719          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.270e-37
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 0
Query:    2 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 84
            GWDVFSL+YDVGAP+STVVT+EVLVEY R FHLLWRIKRAEWSLASAWRLHTSATHVR+       + ALHRCSL+RGQMF LTT L
Sbjct: 1475 GWDVFSLKYDVGAPVSTVVTEEVLVEYPRFFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALLELKGALHRCSLVRGQMFSLTTKL 1561          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQ17_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 2.720e-17
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 85
            +GW+ FSL+Y    P+S V++   + EYRRVF LLWR+KR E SL++ WR HT+A   VR  + +  LHRC L+R +M     NL+
Sbjct:  392 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 477          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2P7_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-17
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 85
            +GW+ FSL+Y    P+S V++   + EYRRVF LLWR+KR E SL++ WR HT+A   VR  + +  LHRC L+R +M     NL+
Sbjct:  587 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 672          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH84_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 1.160e-15
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRECA-----LHRCSLIRGQMFFLTTNL 84
            SGWD+FSL Y V +P++TV+    ++EY+R+FH LWR+KR E SL+++W       H+    R+       +HRC L+R +M   TT L
Sbjct:  685 SGWDIFSLHYRVPSPVNTVINDAAILEYQRIFHFLWRLKRVEHSLSTSWNKDMHLDHM--IKRDFVEFRPLIHRCQLLRSEMIQFTTTL 771          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.410e-15
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 84
            +GW++FSL Y +  P+++V+  +   +YRR+FHLLW++KR E +L  AWR H ++T  R+S +       LH  +L R  M+ L TNL
Sbjct:  400 TGWEIFSLHYQLEPPLNSVIDTKAQDKYRRIFHLLWKLKRVESALCEAWRQHRASTAYRLSEKIPLLSRDLHSANLTRNAMWHLITNL 487          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: LOW (QUALITY PROTEIN: gamma-tubulin complex component 3 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BB48)

HSP 1 Score: 77.8 bits (190), Expect = 7.480e-15
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    2 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHV---RVSNRECALHRCSLIRGQMFFLTTNLR 85
            GWDVF+L+Y V  PISTV T E ++ Y RVF+LLWR KR E+ L ++W++ T+ + V    V      LH+CSL+  +M   T  ++
Sbjct:  519 GWDVFTLDYHVDGPISTVFTPESILMYLRVFNLLWRAKRMEYILTASWKMQTAESRVLYRSVPELWPVLHQCSLLGSEMMHFTQQMQ 605          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Gamma-tubulin (complex component (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z543_HAELA)

HSP 1 Score: 71.2 bits (173), Expect = 9.220e-15
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAW 49
            SGWDVFSL YD+  P++TV T + + +Y RVFHLLWR+KR E SL+ +W
Sbjct:    3 SGWDVFSLTYDIRGPLATVFTPQAMTKYLRVFHLLWRLKRVETSLSGSW 51          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT65_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-14
Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWR--LHTSATHVRVSNRECALHRCSLIRGQM 77
            +GWD+FSL Y + +P++TV+ +  +V+Y+R+FH LWR+KR E +L+++W   +H      R+ +    +HRC L+R +M
Sbjct:  701 TGWDIFSLHYKLTSPVNTVINEAAMVQYQRIFHFLWRLKRVEHALSASWSKDMHLRLIQGRLPSITPLIHRCQLLRSEM 779          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1F1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-14
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 0
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRE----CALHRCSLIRGQMFFLTTNL 84
            +GWD+FSL Y + +PI+TV+    +++Y+R+FH LWR+KR E+ L+ +W    +  H+ + NR       +H C L+R +M   T NL
Sbjct:  561 TGWDIFSLHYKLTSPINTVIDDIAMLDYQRIFHFLWRLKRVEYLLSGSWSKDMNLGHL-IQNRLPGILSIIHSCQLLRSEMIHFTRNL 647          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Spindle9.350e-4287.50pole body component n=2 Tax=Ectocarpus TaxID=2879 ... [more]
NB-ARC7.270e-3779.31and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
Spindle2.720e-1746.51pole body component n=2 Tax=Emiliania huxleyi TaxI... [more]
Spindle2.750e-1746.51pole body component n=2 Tax=Emiliania huxleyi TaxI... [more]
Uncharacterized1.160e-1541.57protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Spindle7.410e-1540.91pole body component n=2 Tax=Dictyocha speculum Tax... [more]
LOW7.480e-1543.68QUALITY PROTEIN: gamma-tubulin complex component 3... [more]
Gamma-tubulin9.220e-1559.18complex component (Fragment) n=1 Tax=Haematococcus... [more]
Spindle1.030e-1439.24pole body component n=1 Tax=Pythium brassicum TaxI... [more]
Spindle1.910e-1438.64pole body component n=1 Tax=Albugo laibachii Nc14 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 2..84
e-value: 1.4E-19
score: 70.7
IPR042241Gamma-tubulin complex, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 1..85
e-value: 9.1E-23
score: 82.9
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 2..84
NoneNo IPR availablePANTHERPTHR19302:SF14GAMMA-TUBULIN COMPLEX COMPONENT 3coord: 2..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10542contigEcto-sp9_F_contig10542:153..1346 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10542.503.1mRNA_Ecto-sp9_F_contig10542.503.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10542 153..1346 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10542.503.1 ID=prot_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWR
LHTSATHVRVSNRECALHRCSLIRGQMFFLTTNLR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040457GCP_C
IPR042241GCP_C_sf
IPR007259GCP