mRNA_Ecto-sp9_F_contig10542.503.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10542.503.1
Unique NamemRNA_Ecto-sp9_F_contig10542.503.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 9.350e-42
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
            +GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVR+         ALHRCSLIRGQMFFLTTNL
Sbjct:  632 TGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALPELRGALHRCSLIRGQMFFLTTNL 719          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.270e-37
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 1
Query:    4 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
            GWDVFSL+YDVGAP+STVVT+EVLVEY R FHLLWRIKRAEWSLASAWRLHTSATHVR+       + ALHRCSL+RGQMF LTT L
Sbjct: 1475 GWDVFSLKYDVGAPVSTVVTEEVLVEYPRFFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALLELKGALHRCSLVRGQMFSLTTKL 1561          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQ17_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 2.720e-17
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 255
            +GW+ FSL+Y    P+S V++   + EYRRVF LLWR+KR E SL++ WR HT+A   VR  + +  LHRC L+R +M     NL+
Sbjct:  392 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 477          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2P7_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-17
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 255
            +GW+ FSL+Y    P+S V++   + EYRRVF LLWR+KR E SL++ WR HT+A   VR  + +  LHRC L+R +M     NL+
Sbjct:  587 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 672          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH84_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 1.160e-15
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRECA-----LHRCSLIRGQMFFLTTNL 252
            SGWD+FSL Y V +P++TV+    ++EY+R+FH LWR+KR E SL+++W       H+    R+       +HRC L+R +M   TT L
Sbjct:  685 SGWDIFSLHYRVPSPVNTVINDAAILEYQRIFHFLWRLKRVEHSLSTSWNKDMHLDHM--IKRDFVEFRPLIHRCQLLRSEMIQFTTTL 771          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.410e-15
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
            +GW++FSL Y +  P+++V+  +   +YRR+FHLLW++KR E +L  AWR H ++T  R+S +       LH  +L R  M+ L TNL
Sbjct:  400 TGWEIFSLHYQLEPPLNSVIDTKAQDKYRRIFHLLWKLKRVESALCEAWRQHRASTAYRLSEKIPLLSRDLHSANLTRNAMWHLITNL 487          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: LOW (QUALITY PROTEIN: gamma-tubulin complex component 3 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BB48)

HSP 1 Score: 77.8 bits (190), Expect = 7.480e-15
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    4 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHV---RVSNRECALHRCSLIRGQMFFLTTNLR 255
            GWDVF+L+Y V  PISTV T E ++ Y RVF+LLWR KR E+ L ++W++ T+ + V    V      LH+CSL+  +M   T  ++
Sbjct:  519 GWDVFTLDYHVDGPISTVFTPESILMYLRVFNLLWRAKRMEYILTASWKMQTAESRVLYRSVPELWPVLHQCSLLGSEMMHFTQQMQ 605          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Gamma-tubulin (complex component (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z543_HAELA)

HSP 1 Score: 71.2 bits (173), Expect = 9.220e-15
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAW 147
            SGWDVFSL YD+  P++TV T + + +Y RVFHLLWR+KR E SL+ +W
Sbjct:    3 SGWDVFSLTYDIRGPLATVFTPQAMTKYLRVFHLLWRLKRVETSLSGSW 51          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT65_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-14
Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWR--LHTSATHVRVSNRECALHRCSLIRGQM 231
            +GWD+FSL Y + +P++TV+ +  +V+Y+R+FH LWR+KR E +L+++W   +H      R+ +    +HRC L+R +M
Sbjct:  701 TGWDIFSLHYKLTSPVNTVINEAAMVQYQRIFHFLWRLKRVEHALSASWSKDMHLRLIQGRLPSITPLIHRCQLLRSEM 779          
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1F1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-14
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRE----CALHRCSLIRGQMFFLTTNL 252
            +GWD+FSL Y + +PI+TV+    +++Y+R+FH LWR+KR E+ L+ +W    +  H+ + NR       +H C L+R +M   T NL
Sbjct:  561 TGWDIFSLHYKLTSPINTVIDDIAMLDYQRIFHFLWRLKRVEYLLSGSWSKDMNLGHL-IQNRLPGILSIIHSCQLLRSEMIHFTRNL 647          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Spindle9.350e-4287.50pole body component n=2 Tax=Ectocarpus TaxID=2879 ... [more]
NB-ARC7.270e-3779.31and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
Spindle2.720e-1746.51pole body component n=2 Tax=Emiliania huxleyi TaxI... [more]
Spindle2.750e-1746.51pole body component n=2 Tax=Emiliania huxleyi TaxI... [more]
Uncharacterized1.160e-1541.57protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Spindle7.410e-1540.91pole body component n=2 Tax=Dictyocha speculum Tax... [more]
LOW7.480e-1543.68QUALITY PROTEIN: gamma-tubulin complex component 3... [more]
Gamma-tubulin9.220e-1559.18complex component (Fragment) n=1 Tax=Haematococcus... [more]
Spindle1.030e-1439.24pole body component n=1 Tax=Pythium brassicum TaxI... [more]
Spindle1.910e-1438.64pole body component n=1 Tax=Albugo laibachii Nc14 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10542contigEcto-sp9_F_contig10542:153..1346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.9e-36
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
KEGG koko:K16570
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10542.503.1prot_Ecto-sp9_F_contig10542.503.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10542 153..1346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.5627477-CDS-Ecto-sp9_F_contig10542:152..2211622928267.5627477-CDS-Ecto-sp9_F_contig10542:152..221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 153..221 +
1692277815.3113594-CDS-Ecto-sp9_F_contig10542:152..2211692277815.3113594-CDS-Ecto-sp9_F_contig10542:152..221Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 153..221 +
1622928267.578425-CDS-Ecto-sp9_F_contig10542:787..9111622928267.578425-CDS-Ecto-sp9_F_contig10542:787..911Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 788..911 +
1692277815.321088-CDS-Ecto-sp9_F_contig10542:787..9111692277815.321088-CDS-Ecto-sp9_F_contig10542:787..911Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 788..911 +
1622928267.5929732-CDS-Ecto-sp9_F_contig10542:1284..13461622928267.5929732-CDS-Ecto-sp9_F_contig10542:1284..1346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 1285..1346 +
1692277815.3287528-CDS-Ecto-sp9_F_contig10542:1284..13461692277815.3287528-CDS-Ecto-sp9_F_contig10542:1284..1346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10542 1285..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10542.503.1

>prot_Ecto-sp9_F_contig10542.503.1 ID=prot_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWR
LHTSATHVRVSNRECALHRCSLIRGQMFFLTTNLR
back to top

mRNA from alignment at Ecto-sp9_F_contig10542:153..1346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10542.503.1 ID=mRNA_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10542:153..1346+ (Ectocarpus species9 EcSCA_722f female)
AGTGGGTGGGATGTGTTTTCGCTCGAGTACGACGTAGGCGCTCCCATCTC GACGGTGGTTACGAAAGAGGTAAGTAAGAAGTAAGCACGTTGTTGAGAGC TGGTTTACCCCTTGCCTCGATAGATATGTACCTCCCAGAAATATTCCATG GAAAACTGCCGCCGTGATGACAGTAGAATACGTGGGCCGTGTTTTGGCGA GTATATTGTTTCCCGATCCTAGCATGAATTGGACTTACCACAAAGCGCTC TTCTTGGAGCCCAATGGGCGTTCACAAGGTGATGAAGGCCTTGTCAAGGT TAGCGTATACCTCTCGGTGTCGTCATAAGCGTTGTGTAGTCACCGTTCTC TCAAAGAAATGCAGGTGTTTCGCGAGCGTTTTCGCCGTTTTTCTGATGAA TTGCGCCTCGGGGGCGAAATAAGCGTTGTGCATGCTGTTGCGGCAATTAC TGTTAGCACGATGTTTCAACTTGTTGTGTTGCCATGGAAGTCAAGATCGA CATGATGGCAACGTTGTCGGTGATGCTTCGGTGAGACGGATGACGGTGTC GATCATGAGGGTACTCTAACGACACGACTCATTTCTCGTGCCTATCTCCA AATAGCCACCCCCGGTGTCTGATGTGTTGCCCCAGGTGCTAGTCGAGTAC CGAAGAGTCTTCCACCTGCTCTGGCGTATCAAGCGGGCAGAGTGGAGCCT GGCTTCGGCCTGGCGACTTCACACAAGCGCCACACACGTCCGGGTGAGCA ACAGAGAATGTTAACAGCGAGAGGGAGACATAAACACATTGGGGGAAGGG GAGAGAGAAACACACACACAGAGAGAGTGAGTGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGCCAAAAAACACTTTTCTTGCGCCTGCCGTTGTG CACCAACCCGCTCCTTAGTTGGCTCTTGTCAACCCTGACTGATATCACCC GCTTCTATTGTCTTGTGTTTTGTTGTGCTCTCTCTTCCTGCTGCCCCTTG GTCTGCCTTACATTTGCTGGCGTGTTGTGATGGCTTGTTGCACTTGGCCT CGTCGGCGTGCTGAAACACGACAACGATACTCCTACAATAATGTTGGACG ACAGCTGGAGCAAGCCCTTCCGGAGCTGAGAGGCGCGCTGCACCGGTGCA GCCTAATTCGCGGACAGATGTTTTTCCTCACCACTAACCTCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10542:153..1346+

>mRNA_Ecto-sp9_F_contig10542.503.1 ID=mRNA_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10542:153..1346+ (Ectocarpus species9 EcSCA_722f female)
AGTGGGTGGGATGTGTTTTCGCTCGAGTACGACGTAGGCGCTCCCATCTC
GACGGTGGTTACGAAAGAGAGTGGGTGGGATGTGTTTTCGCTCGAGTACG
ACGTAGGCGCTCCCATCTCGACGGTGGTTACGAAAGAGGTGCTAGTCGAG
TACCGAAGAGTCTTCCACCTGCTCTGGCGTATCAAGCGGGCAGAGTGGAG
CCTGGCTTCGGCCTGGCGACTTCACACAAGCGCCACACACGTCCGGGTGA
GCAACAGAGAATGTGCTAGTCGAGTACCGAAGAGTCTTCCACCTGCTCTG
GCGTATCAAGCGGGCAGAGTGGAGCCTGGCTTCGGCCTGGCGACTTCACA
CAAGCGCCACACACGTCCGGGTGAGCAACAGAGAATGCGCGCTGCACCGG
TGCAGCCTAATTCGCGGACAGATGTTTTTCCTCACCACTAACCTCAGGGC
GCGCTGCACCGGTGCAGCCTAATTCGCGGACAGATGTTTTTCCTCACCAC
TAACCTCAGG
back to top