mRNA_Ecto-sp9_F_contig10542.503.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI) HSP 1 Score: 154 bits (389), Expect = 9.350e-42 Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
+GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVR+ ALHRCSLIRGQMFFLTTNL
Sbjct: 632 TGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALPELRGALHRCSLIRGQMFFLTTNL 719
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 140 bits (353), Expect = 7.270e-37 Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 1
Query: 4 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
GWDVFSL+YDVGAP+STVVT+EVLVEY R FHLLWRIKRAEWSLASAWRLHTSATHVR+ + ALHRCSL+RGQMF LTT L
Sbjct: 1475 GWDVFSLKYDVGAPVSTVVTEEVLVEYPRFFHLLWRIKRAEWSLASAWRLHTSATHVRLEQALLELKGALHRCSLVRGQMFSLTTKL 1561
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQ17_EMIHU) HSP 1 Score: 84.7 bits (208), Expect = 2.720e-17 Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 255
+GW+ FSL+Y P+S V++ + EYRRVF LLWR+KR E SL++ WR HT+A VR + + LHRC L+R +M NL+
Sbjct: 392 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 477
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2P7_EMIHU) HSP 1 Score: 84.7 bits (208), Expect = 2.750e-17 Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATH-VRVSNRECALHRCSLIRGQMFFLTTNLR 255
+GW+ FSL+Y P+S V++ + EYRRVF LLWR+KR E SL++ WR HT+A VR + + LHRC L+R +M NL+
Sbjct: 587 TGWEAFSLDYRADPPVSAVLSAAAVGEYRRVFTLLWRLKRVELSLSAVWRRHTTAARLVRALSSDALLHRCHLLRHEMVHFVFNLQ 672
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH84_PYTOL) HSP 1 Score: 80.1 bits (196), Expect = 1.160e-15 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRECA-----LHRCSLIRGQMFFLTTNL 252
SGWD+FSL Y V +P++TV+ ++EY+R+FH LWR+KR E SL+++W H+ R+ +HRC L+R +M TT L
Sbjct: 685 SGWDIFSLHYRVPSPVNTVINDAAILEYQRIFHFLWRLKRVEHSLSTSWNKDMHLDHM--IKRDFVEFRPLIHRCQLLRSEMIQFTTTL 771
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 7.410e-15 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNR----ECALHRCSLIRGQMFFLTTNL 252
+GW++FSL Y + P+++V+ + +YRR+FHLLW++KR E +L AWR H ++T R+S + LH +L R M+ L TNL
Sbjct: 400 TGWEIFSLHYQLEPPLNSVIDTKAQDKYRRIFHLLWKLKRVESALCEAWRQHRASTAYRLSEKIPLLSRDLHSANLTRNAMWHLITNL 487
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: LOW (QUALITY PROTEIN: gamma-tubulin complex component 3 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BB48) HSP 1 Score: 77.8 bits (190), Expect = 7.480e-15 Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 4 GWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHV---RVSNRECALHRCSLIRGQMFFLTTNLR 255
GWDVF+L+Y V PISTV T E ++ Y RVF+LLWR KR E+ L ++W++ T+ + V V LH+CSL+ +M T ++
Sbjct: 519 GWDVFTLDYHVDGPISTVFTPESILMYLRVFNLLWRAKRMEYILTASWKMQTAESRVLYRSVPELWPVLHQCSLLGSEMMHFTQQMQ 605
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Gamma-tubulin (complex component (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z543_HAELA) HSP 1 Score: 71.2 bits (173), Expect = 9.220e-15 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAW 147
SGWDVFSL YD+ P++TV T + + +Y RVFHLLWR+KR E SL+ +W
Sbjct: 3 SGWDVFSLTYDIRGPLATVFTPQAMTKYLRVFHLLWRLKRVETSLSGSW 51
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT65_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.030e-14 Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWR--LHTSATHVRVSNRECALHRCSLIRGQM 231
+GWD+FSL Y + +P++TV+ + +V+Y+R+FH LWR+KR E +L+++W +H R+ + +HRC L+R +M
Sbjct: 701 TGWDIFSLHYKLTSPVNTVINEAAMVQYQRIFHFLWRLKRVEHALSASWSKDMHLRLIQGRLPSITPLIHRCQLLRSEM 779
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Match: Spindle (pole body component n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1F1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.910e-14 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1 SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRLHTSATHVRVSNRE----CALHRCSLIRGQMFFLTTNL 252
+GWD+FSL Y + +PI+TV+ +++Y+R+FH LWR+KR E+ L+ +W + H+ + NR +H C L+R +M T NL
Sbjct: 561 TGWDIFSLHYKLTSPINTVIDDIAMLDYQRIFHFLWRLKRVEYLLSGSWSKDMNLGHL-IQNRLPGILSIIHSCQLLRSEMIHFTRNL 647 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10542.503.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10542.503.1 >prot_Ecto-sp9_F_contig10542.503.1 ID=prot_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp SGWDVFSLEYDVGAPISTVVTKEVLVEYRRVFHLLWRIKRAEWSLASAWRback to top mRNA from alignment at Ecto-sp9_F_contig10542:153..1346+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10542.503.1 ID=mRNA_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10542:153..1346+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10542:153..1346+ >mRNA_Ecto-sp9_F_contig10542.503.1 ID=mRNA_Ecto-sp9_F_contig10542.503.1|Name=mRNA_Ecto-sp9_F_contig10542.503.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10542:153..1346+ (Ectocarpus species9 EcSCA_722f female)back to top |