prot_Ecto-sp9_F_contig998.18042.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig998.18042.1
Unique Nameprot_Ecto-sp9_F_contig998.18042.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length632
Homology
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 859 bits (2219), Expect = 3.930e-308
Identity = 501/583 (85.93%), Postives = 511/583 (87.65%), Query Frame = 0
Query:   57 ERGTEGGEIPEDRPRFDDAFLSTDPHRLRRRLQGRGGGPESGSWLTCETLDPSAEEDTLTIDADSAGEDDERCWEIPNVDGSTLTISFRQADFAAGDELTVENDGDTDVEYEQDLGLVLDGDVIEVGADGEARELFYSSTATVRFSATNTTAERTVVIAYKRTVDQQISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGGPGKGTELAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGSSAAPVRSLRRWLRHHERGPEAVVAQTAPPGGPTGGGVEMGSGGATSGVLSEPVVARTSGLVGXXXXXXXXXVDVAADGGDADRPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------PTSTAPGVASLLPVLPPAAVAGHEANPAATSPTHGGGAEAFPAAASATAVAAAGDEQLVGGPTHVHPAAVAAVDVPDPLSVPASRFEERASATTTA 631
            ERGTEGGEIPEDR RFD AFL TDPHRLRRRL GRGG P S SWLTCETLDPSAEEDTL IDADSAGE DE CW+IPNVDGSTLTISFRQADFAAGDELTVE+DGDTDVEYE+  GLVLDGDVIEVGADGEARELFYSSTATVRFSATNTTAER VV+AYKRTVDQ IS+SFLFNSTL+LLGFVWCGVTFARLVCVHRARESALSGAH SDRRGGRGDQTGAG T TGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGV GPGKGTE A AGEGVEEEA CAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESK G +GSSAAP RS+RRWLR+HERGP A VAQTAP GGP GGGVEMGSGG T GVLSEPVVA  SGLVG    XXXXXV VAADGGD DRPRAA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PTSTAPGVASLLP+LPPAAVAGHEANP ATS                    AAGDEQ VGGPTHVHPAAVAAVDVPDPLSV ASRFEERASATTTA
Sbjct:   57 ERGTEGGEIPEDRERFDYAFLRTDPHRLRRRLSGRGGRPGSESWLTCETLDPSAEEDTLNIDADSAGEGDEICWDIPNVDGSTLTISFRQADFAAGDELTVEDDGDTDVEYEEGRGLVLDGDVIEVGADGEARELFYSSTATVRFSATNTTAERMVVMAYKRTVDQ-ISSSFLFNSTLVLLGFVWCGVTFARLVCVHRARESALSGAHLSDRRGGRGDQTGAGLTLTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVSGPGKGTEPAVAGEGVEEEAMCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKVGPLGSSAAPFRSVRRWLRNHERGPGAAVAQTAPSGGPPGGGVEMGSGGETGGVLSEPVVASMSGLVGDGSGXXXXXVGVAADGGDPDRPRAASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSTAPGVASLLPLLPPAAVAGHEANPTATSXXX----XXXXXXXXXXXXXAAGDEQSVGGPTHVHPAAVAAVDVPDPLSVSASRFEERASATTTA 634          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: Similar (to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 585 bits (1509), Expect = 1.570e-203
Identity = 358/413 (86.68%), Postives = 361/413 (87.41%), Query Frame = 0
Query:  223 QISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGGPGKGTELAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGSSAAPVRSLRRWLRHHERGPEAVVAQTAPPGGPTGGGVEMGSGGATSGVLSEPVVARTSGLVGXXXXXXXXXVDVAADGGDADRPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSTAP----GVASLLPVLPPAAVAGHEANPAATSPTHGGGAEAFPAAASATAVAAAGDEQLVGGPTHVHPAAVAAVDVPDPLSVPASRFEERASATTTA 631
            QISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKL GGGGDMDVEKGWGVGGPGKGTE AAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGL+GSSA PVRSLRRWLR+HERGP AVVAQTAPPGGPTGG VEMGSGGATSGVLSEPVVARTSGLVG   XXX   VDVAADGGDADRPRAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          GVASLLPVLP   VAGHEANPAA                        GDEQ VGGPT VHPAAVAAVDVPDPLSV ASRFEERASA+TTA
Sbjct:   20 QISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLAGGGGDMDVEKGWGVGGPGKGTEPAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLVGSSAVPVRSLRRWLRNHERGPGAVVAQTAPPGGPTGGEVEMGSGGATSGVLSEPVVARTSGLVGGGSXXXFGGVDVAADGGDADRPRAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVASLLPVLPXXXVAGHEANPAAXXXXXXXX-XXXXXXXXXXXXXXXGDEQSVGGPTDVHPAAVAAVDVPDPLSVSASRFEERASASTTA 431          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V0K8_9POAL)

HSP 1 Score: 77.4 bits (189), Expect = 4.940e-12
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  345 AAAGEGVEEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGSSAAPV 420
            AAA    ++EA CA+CL + EDG+  R LP CGH FHAGCVD+WLA   TCP C+  +  P     A  +  +  PV
Sbjct:  128 AAAKGSSDDEAKCAVCLAKLEDGEAARFLPRCGHGFHAGCVDMWLASHTTCPLCRLTIAKPDVTLPASALAPALPPV 204          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: E3 (ubiquitin-protein ligase At1g63170-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901B6F1)

HSP 1 Score: 79.3 bits (194), Expect = 5.000e-12
Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 0
Query:  303 SLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGG-PGKGTELAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGS 415
            S E  N LP+++ F SK  G G   D E G   GG    GTE      G  E+A C ICL + ED  +LR LPC HFFHA CVD WL  + +CP CK  +E  + +S +   GS
Sbjct:  307 SEESINALPRYK-FKSKRNGSGIRGDNETGVEEGGFLAAGTEKERVISG--EDAVCCICLSKYEDNDELRELPCSHFFHAECVDKWLKINASCPLCKFEIEVENEDSSSPAEGS 417          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V187_9POAL)

HSP 1 Score: 77.4 bits (189), Expect = 8.220e-12
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  345 AAAGEGVEEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGSSAAPV 420
            AAA    ++EA CA+CL + EDG+  R LP CGH FHAGCVD+WLA   TCP C+  +  P     A  +  +  PV
Sbjct:  176 AAAKGSSDDEAKCAVCLAKLEDGEAARFLPRCGHGFHAGCVDMWLASHTTCPLCRLTIAKPDVTLPASALAPALPPV 252          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZQU2_DAVIN)

HSP 1 Score: 75.5 bits (184), Expect = 9.470e-12
Identity = 44/105 (41.90%), Postives = 55/105 (52.38%), Query Frame = 0
Query:  295 GLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGGP-GKGTELAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCK 398
            G TP  I      N LP ++    K+   GGD ++  G G GG    GTE   A  G  E+A C ICL +  D  ++R LPC HFFH  CVD WL  + +CP CK
Sbjct:   87 GATPESI------NALPTYKFMLKKI---GGDQEINSGGGEGGVLAAGTENERAISG--EDAVCCICLAKYADNDEVRELPCSHFFHVECVDKWLKINASCPLCK 180          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CYW0_9ORYZ)

HSP 1 Score: 74.7 bits (182), Expect = 1.150e-11
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 0
Query:  343 ELAAAGEGVEEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQP---VEPPS 405
            E   AGE  EE   CAICL E   G ++RVLP CGH FHA CVDVWL  S TCP C++    V PPS
Sbjct:   97 ETGGAGEEEEERPECAICLAEFARGDEVRVLPPCGHGFHAACVDVWLVSSSTCPSCRRSPLLVAPPS 163          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V245_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-11
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0
Query:  353 EEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLIGSSAAPVRSLRRWLRHHERGP 434
            E  TCAIC+C+ E+G  +R+LPC H+FHA C+DVWL ++  CP CK+ +     + K  +      PV  +  + R   R P
Sbjct:  632 ESDTCAICICDYEEGDQVRLLPCQHYFHAECIDVWLRKNKACPMCKRDIVEGLEQGKEVVQSGVIVPVADMAPYNRRRRRRP 713          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A426YI39_ENSVE)

HSP 1 Score: 72.8 bits (177), Expect = 1.710e-11
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0
Query:  345 AAAGEGVEEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQ 399
            AA GEG  E   C ICL E E+G +LRVLP CGH FH GCVD WLA  P+CP C++
Sbjct:   87 AAGGEGPAE---CPICLAEFEEGDELRVLPQCGHGFHVGCVDAWLASHPSCPSCRR 139          
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZMS8_DAVIN)

HSP 1 Score: 77.4 bits (189), Expect = 2.060e-11
Identity = 46/108 (42.59%), Postives = 56/108 (51.85%), Query Frame = 0
Query:  295 GLTPAQIRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGGP-GKGTELAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPV 401
            G TP  I      N LP ++    K+   GGD ++  G G GG    GTE   A  G  E+A C ICL +  D  +LR LPC HFFH  CVD WL  + +CP CK  V
Sbjct:  298 GATPESI------NALPTYKFMLKKI---GGDQEINSGGGEGGVLAAGTENERAISG--EDAVCCICLAKYADNDELRELPCSHFFHVECVDKWLKINASCPLCKSEV 394          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig998.18042.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type3.930e-30885.93domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar1.570e-20386.68to ring finger protein 167 isoform 1 n=1 Tax=Ectoc... [more]
RING-type4.940e-1246.75domain-containing protein (Fragment) n=1 Tax=Eragr... [more]
E35.000e-1243.86ubiquitin-protein ligase At1g63170-like n=2 Tax=Ip... [more]
RING-type8.220e-1246.75domain-containing protein (Fragment) n=1 Tax=Eragr... [more]
RING-type9.470e-1241.90domain-containing protein (Fragment) n=1 Tax=David... [more]
RING-type1.150e-1156.72domain-containing protein n=1 Tax=Oryza meyeriana ... [more]
Hypothetical1.540e-1139.02protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
RING-type1.710e-1160.71domain-containing protein n=3 Tax=Musaceae TaxID=4... [more]
RING-type2.060e-1142.59domain-containing protein n=1 Tax=Davidia involucr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 356..398
e-value: 0.0064
score: 8.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 357..397
e-value: 1.9E-8
score: 44.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 356..398
e-value: 1.2E-12
score: 48.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 357..398
score: 12.401
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 344..414
e-value: 4.4E-19
score: 69.4
NoneNo IPR availablePANTHERPTHR45798FAMILY NOT NAMEDcoord: 225..408
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 252..631
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..251
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 351..404
NoneNo IPR availableTMHMMTMhelixcoord: 228..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig998contigEcto-sp9_F_contig998:415..7509 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig998.18042.1mRNA_Ecto-sp9_F_contig998.18042.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig998 210..9889 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig998.18042.1 ID=prot_Ecto-sp9_F_contig998.18042.1|Name=mRNA_Ecto-sp9_F_contig998.18042.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=632bp
MGYADRSGGSSGPSGLATPAAAAAAAAAGAQDAGGVGRDAEGGGSTAEAA
AAAAAAERGTEGGEIPEDRPRFDDAFLSTDPHRLRRRLQGRGGGPESGSW
LTCETLDPSAEEDTLTIDADSAGEDDERCWEIPNVDGSTLTISFRQADFA
AGDELTVENDGDTDVEYEQDLGLVLDGDVIEVGADGEARELFYSSTATVR
FSATNTTAERTVVIAYKRTVDQQISTSFLFNSTLILLGFVWCGVTFARLV
CVHRARESALSGAHFSDRRGGRGDQTGAGFTGTGLGAATSAGPAGLTPAQ
IRSLEQTNVLPKHRRFGSKLVGGGGDMDVEKGWGVGGPGKGTELAAAGEG
VEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQP
VEPPSTESKAGLIGSSAAPVRSLRRWLRHHERGPEAVVAQTAPPGGPTGG
GVEMGSGGATSGVLSEPVVARTSGLVGGGSGGGSGGVDVAADGGDADRPR
AASPGGGSSSEVVVTLEEEEEDEQWQGEPPAAAAAPTSTAPGVASLLPVL
PPAAVAGHEANPAATSPTHGGGAEAFPAAASATAVAAAGDEQLVGGPTHV
HPAAVAAVDVPDPLSVPASRFEERASATTTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD