prot_Ecto-sp9_F_contig9864.17942.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9864.17942.1
Unique Nameprot_Ecto-sp9_F_contig9864.17942.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length90
Homology
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.670e-45
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 0
Query:   13 QETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            Q  DLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR
Sbjct:   36 QGEDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 112          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.050e-42
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0
Query:   13 QETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            Q  DLLHTRV GTPD TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRAR
Sbjct:   44 QGDDLLHTRVNGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRAR 120          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 6.080e-24
Identity = 42/60 (70.00%), Postives = 55/60 (91.67%), Query Frame = 0
Query:   30 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D+RDA+EAVRAR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRAR 60          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.210e-23
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 0
Query:   32 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YR52_9CRYP)

HSP 1 Score: 92.8 bits (229), Expect = 2.100e-22
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0
Query:    1 SAFRAASLSRLGQETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            S  R A +SR G+  D          D+ M+++Y+GNLP+D + +D+ED+F+KYG+I D+ LK P RPPAF FVTFE + DA++A+R R
Sbjct:    7 SLERVACVSRQGRHPD----------DKKMAKVYVGNLPLDCRVRDIEDLFWKYGRIRDIDLKTPSRPPAFAFVTFESTMDAEDAIRGR 85          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KZU8_CHEQI)

HSP 1 Score: 92.8 bits (229), Expect = 4.530e-22
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   17 LLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            LL+ R+     R    +Y+GNLP+D+KE +LED+FYKYG+I D+++K+P RPP + FV FED RDA EA+R R
Sbjct:    3 LLNRRITVMAGRASRTIYVGNLPLDVKEWELEDLFYKYGRIVDIEMKLPPRPPGYSFVEFEDPRDAQEAIRGR 75          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQQ1_SAPDV)

HSP 1 Score: 92.0 bits (227), Expect = 1.390e-21
Identity = 35/58 (60.34%), Postives = 50/58 (86.21%), Query Frame = 0
Query:   32 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            R+Y+GNLPMD++ ++++D+FYKYG+I D+ +K+P RPPAF FV FED RDAD+A+R R
Sbjct:    4 RIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGR 61          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-21
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 0
Query:   32 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.510e-21
Identity = 39/60 (65.00%), Postives = 53/60 (88.33%), Query Frame = 0
Query:   30 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV F+D RDA++AVRAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRAR 60          
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MJN0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.110e-21
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 0
Query:   30 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 89
            MSR+Y+GNLPMD++ +++EDIFYKYG+I D+ +K P RPPAF FV FED+RDA++A+R R
Sbjct:    1 MSRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGR 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.670e-4597.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.050e-4293.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.080e-2470.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97... [more]
Hypothetical3.210e-2363.79protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical2.100e-2247.19protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID... [more]
RRM4.530e-2253.42domain-containing protein n=1 Tax=Chenopodium quin... [more]
Uncharacterized1.390e-2160.34protein n=1 Tax=Saprolegnia diclina (strain VS20) ... [more]
Hypothetical1.730e-2163.79protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized2.510e-2165.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.110e-2163.33protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 32..89
e-value: 3.5E-6
score: 36.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 33..88
e-value: 4.3E-16
score: 58.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 31..89
score: 14.897
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 14..89
e-value: 3.1E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 30..89
NoneNo IPR availablePANTHERPTHR23147:SF140coord: 30..89
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 25..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9864contigEcto-sp9_F_contig9864:1363..3173 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9864.17942.1mRNA_Ecto-sp9_F_contig9864.17942.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9864 1363..3173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9864.17942.1 ID=prot_Ecto-sp9_F_contig9864.17942.1|Name=mRNA_Ecto-sp9_F_contig9864.17942.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
SAFRAASLSRLGQETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDI
FYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf