mRNA_Ecto-sp9_F_contig9864.17942.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9864.17942.1
Unique NamemRNA_Ecto-sp9_F_contig9864.17942.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.670e-45
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   37 QETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            Q  DLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR
Sbjct:   36 QGEDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 112
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.050e-42
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:   37 QETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            Q  DLLHTRV GTPD TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRAR
Sbjct:   44 QGDDLLHTRVNGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRAR 120
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 6.080e-24
Identity = 42/60 (70.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   88 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D+RDA+EAVRAR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRAR 60
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.210e-23
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   94 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YR52_9CRYP)

HSP 1 Score: 92.8 bits (229), Expect = 2.100e-22
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 SAFRAASLSRLGQETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            S  R A +SR G+  D          D+ M+++Y+GNLP+D + +D+ED+F+KYG+I D+ LK P RPPAF FVTFE + DA++A+R R
Sbjct:    7 SLERVACVSRQGRHPD----------DKKMAKVYVGNLPLDCRVRDIEDLFWKYGRIRDIDLKTPSRPPAFAFVTFESTMDAEDAIRGR 85
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KZU8_CHEQI)

HSP 1 Score: 92.8 bits (229), Expect = 4.530e-22
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   49 LLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            LL+ R+     R    +Y+GNLP+D+KE +LED+FYKYG+I D+++K+P RPP + FV FED RDA EA+R R
Sbjct:    3 LLNRRITVMAGRASRTIYVGNLPLDVKEWELEDLFYKYGRIVDIEMKLPPRPPGYSFVEFEDPRDAQEAIRGR 75
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQQ1_SAPDV)

HSP 1 Score: 92.0 bits (227), Expect = 1.390e-21
Identity = 35/58 (60.34%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   94 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            R+Y+GNLPMD++ ++++D+FYKYG+I D+ +K+P RPPAF FV FED RDAD+A+R R
Sbjct:    4 RIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGR 61
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-21
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   94 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.510e-21
Identity = 39/60 (65.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   88 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV F+D RDA++AVRAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRAR 60
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BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MJN0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.110e-21
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   88 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 267
            MSR+Y+GNLPMD++ +++EDIFYKYG+I D+ +K P RPPAF FV FED+RDA++A+R R
Sbjct:    1 MSRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGR 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9864.17942.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.670e-4597.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.050e-4293.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.080e-2470.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97... [more]
Hypothetical3.210e-2363.79protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical2.100e-2247.19protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID... [more]
RRM4.530e-2253.42domain-containing protein n=1 Tax=Chenopodium quin... [more]
Uncharacterized1.390e-2160.34protein n=1 Tax=Saprolegnia diclina (strain VS20) ... [more]
Hypothetical1.730e-2163.79protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized2.510e-2165.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.110e-2163.33protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9864contigEcto-sp9_F_contig9864:1363..3173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue8.3e-36
Seed eggNOG ortholog2880.D8LPT5
Preferred nameSR30
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-18_002400.1
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.7474656-CDS-Ecto-sp9_F_contig9864:1362..14081622931079.7474656-CDS-Ecto-sp9_F_contig9864:1362..1408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9864 1363..1408 +
1692279023.362324-CDS-Ecto-sp9_F_contig9864:1362..14081692279023.362324-CDS-Ecto-sp9_F_contig9864:1362..1408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9864 1363..1408 +
1622931079.7656548-CDS-Ecto-sp9_F_contig9864:2949..31731622931079.7656548-CDS-Ecto-sp9_F_contig9864:2949..3173Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9864 2950..3173 +
1692279023.3737073-CDS-Ecto-sp9_F_contig9864:2949..31731692279023.3737073-CDS-Ecto-sp9_F_contig9864:2949..3173Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9864 2950..3173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9864.17942.1prot_Ecto-sp9_F_contig9864.17942.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9864 1363..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9864.17942.1

>prot_Ecto-sp9_F_contig9864.17942.1 ID=prot_Ecto-sp9_F_contig9864.17942.1|Name=mRNA_Ecto-sp9_F_contig9864.17942.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
SAFRAASLSRLGQETDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDI
FYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR*
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mRNA from alignment at Ecto-sp9_F_contig9864:1363..3173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9864.17942.1 ID=mRNA_Ecto-sp9_F_contig9864.17942.1|Name=mRNA_Ecto-sp9_F_contig9864.17942.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1811bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9864:1363..3173+ (Ectocarpus species9 EcSCA_722f female)
AGCGCATTCCGAGCAGCGTCTCTCTCTCGTCTTGGGCAGGAAACAGGTAA
AGTGGGGGCCTTCGGTAGGTTTGATACCCCCCCTCCCTTGTGATTTGTGG
TTGTTACAATCCCGTGGTGTTTTTTTCTCTGATTCTTTAGTTGTTGCCAG
CCACCACTCCACCCGCTCTGAGGTATGATGGAATGAGTAGGGACAGCAGC
GGGTTGGAATGGTGCTCTCCCCAAACCGGATCCGTGGCTCGAGAGGAACC
CCGAAGCAGAGTAACGCCAACCTTTGGGCATACCTCTTCGGGGTACGAAG
GCTCTCGGCGTTGCGCTTTCCACCTTGCAGACGTCCCAGAAGAGGGCATC
TGGTTTTTGTCTTTGTGTTGTCGCCCAACAGAAGACGGTGAACGGAACTC
TTGTGTGCCAGAGACACGGACGGTACCTACTGGTATGTTGCGGGGACGGC
GCCAGGCAAAGGGCCCTGCTGGGCGTATGGGTGGAGCGGGTCAAAGCACA
TAGCCCTCTGCCAGCTGGAAAATAACTTGCGCGCGAGGCTACGGTGGATT
TTCGCCCTCGGATTTTGGCCATGACGGCGAGATTCCATTTTTTTTGTTGT
AGGAAATTACAACTCGGCGGACAGGAGGCGGGAGGTTGAGGAAAAAGACT
CGTTTCTTATCTCCTCGCAAAAACAGAGGGAAAAAAAAGTGTACCCCACG
GGGGAGATGTCGTGTGTGCTGCTCCGGGGAGTCGTACTGCTGTAGAAACA
CAGGGAGTGTGTACGACTTCGCCATGAATTCATTGTTGAATTTTCGGGAC
TCTCTTTGGCTGTGGATAGATCTCGGATGGATGCGTTGCGTGTGTAGTGT
GTAAAATAAAAATTGAAACGCTCAACTCGTACAGCAGTAGTAAATGCTCT
CGTGCGACCCAGCCACGTGTGACGGGTTGCGTAGAGGCTTACCGGTAGAG
TTTAAGGCCGGTTTGGCCGCGTGGTCAGCTACGGGTTGATGCGGAGCGAT
ACAGGAGCTGATACCGAGCGATGGTCTCTTGGTCCTTGGTTGGTTTGTGG
CGTGTGTGCGGGCATGACCACAAAGGTCAGAGGGTACTATCTTGTGTCAG
ATCTTAATTTACCGTAAAAACGAGGATCGAGGTTCTTCTGTCCTTTCCCA
TACACACATTCGAGACGTCTGTGAGATTGTGTATACTTTCAAACACTCAC
AACGAATTTGTGCCGTATTTTTGTCCGATCCCGTCTGGCCTTGTCAGAAC
TCAACCGGAAAAACGAGTAGAGAGTACAGCAGTATTCAATTTAGTCTGTT
TCGTTCACTATAATTGTTTCCTTTACTATGTAACACAAGCGAATTTACCT
TATTACTTCGACCCCTCTCCCGATTCCAGGTCTCACTGCCGAACGTTAAC
CCTCACTTAGGTTTGCCGCATCGTACGACCAGCTCTTTTTATCTGATGTC
AAGAATCGACTAATACGCTCTGCGTAGTCGTGCATACCGCACCTTGCAAG
TGATTGCGCCGCAAAATCTACAATTCACGAGCTTTTCTTCCGTTGGCTGC
ACTTCTTCTGATGTGGCCGATAACTCATGGGGCGAAGACCTCCTTCACAC
ACGAGTCAAAGGCACCCCCGACCGCACCATGTCTCGGCTATACATCGGCA
ACCTGCCCATGGACATGAAGGAGAAAGACCTGGAGGACATCTTCTACAAG
TACGGTAAGATCACCGACATGCAGCTCAAGATGCCCGAGCGCCCGCCGGC
GTTCGGGTTCGTGACGTTCGAGGACTCTAGGGACGCCGACGAGGCAGTCA
GGGCCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9864:1363..3173+

>mRNA_Ecto-sp9_F_contig9864.17942.1 ID=mRNA_Ecto-sp9_F_contig9864.17942.1|Name=mRNA_Ecto-sp9_F_contig9864.17942.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9864:1363..3173+ (Ectocarpus species9 EcSCA_722f female)
AGCGCATTCCGAGCAGCGTCTCTCTCTCGTCTTGGGCAGGAAACAGAGCG
CATTCCGAGCAGCGTCTCTCTCTCGTCTTGGGCAGGAAACAGACCTCCTT
CACACACGAGTCAAAGGCACCCCCGACCGCACCATGTCTCGGCTATACAT
CGGCAACCTGCCCATGGACATGAAGGAGAAAGACCTGGAGGACATCTTCT
ACAAGTACGGTAAGATCACCGACATGCAGCTCAAGATGCCCGAGCGCCCG
CCGGCGTTCGGGTTCGTGACGTTCGAGGACTCTAGGGACGCCGACGAGGC
AGTCAGGGCCAGGTAAACCTCCTTCACACACGAGTCAAAGGCACCCCCGA
CCGCACCATGTCTCGGCTATACATCGGCAACCTGCCCATGGACATGAAGG
AGAAAGACCTGGAGGACATCTTCTACAAGTACGGTAAGATCACCGACATG
CAGCTCAAGATGCCCGAGCGCCCGCCGGCGTTCGGGTTCGTGACGTTCGA
GGACTCTAGGGACGCCGACGAGGCAGTCAGGGCCAGGTAA
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