prot_Ecto-sp9_F_contig9835.17920.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9835.17920.1
Unique Nameprot_Ecto-sp9_F_contig9835.17920.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length121
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9835.17920.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 25..68
e-value: 0.0015
score: 27.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 29..59
e-value: 6.9E-7
score: 29.3
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 30..57
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 30..59
score: 10.073
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 25..80
e-value: 2.7E-8
score: 35.6
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 25..65
NoneNo IPR availablePANTHERPTHR47540:SF2coord: 13..76
NoneNo IPR availablePANTHERPTHR47540FAMILY NOT NAMEDcoord: 13..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9835contigEcto-sp9_F_contig9835:1081..3524 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9835.17920.1mRNA_Ecto-sp9_F_contig9835.17920.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9835 1081..3524 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9835.17920.1 ID=prot_Ecto-sp9_F_contig9835.17920.1|Name=mRNA_Ecto-sp9_F_contig9835.17920.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=121bp
MEENSAGTAAAAASSSTATLKARSGGRRRSCNRCSAKKERCDGHEPCHRC
IRAGSECLYASCRTLGRPRNQPTPPKGGASGGAGGGRAKPTPAASRKTTS
TTTTAAAAAAGSAAGASTVTT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf