prot_Ecto-sp9_F_contig9782.17871.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9782.17871.1
Unique Name	prot_Ecto-sp9_F_contig9782.17871.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	73

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.920e-39
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0

Query:    1 MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73
            ME  EYEPEEA R A  EEDGL+MSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:    1 MEEHEYEPEEAERAAVGEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73

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BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.600e-35
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0

Query:    1 MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73
            ME KE EPEEAG GA EEEDGL+MSDFEDLLLDHLKTTEY PGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:  760 MEDKEIEPEEAGTGATEEEDGLDMSDFEDLLLDHLKTTEYTPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 832

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.340e-7
Identity = 29/38 (76.32%), Postives = 29/38 (76.32%), Query Frame = 0

Query:   36 KTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73
            KT   P GE     GDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:  568 KTRLRPQGE-----GDAPDGGLYFIVEGRVDVLVNSAG 600

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Cyclic	4.920e-39	90.41	nucleotide-binding domain-containing protein n=1 T...	[more]
cGMP-dependent	4.600e-35	91.78	protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34...	[more]
cGMP-dependent	6.340e-7	76.32	protein kinase n=1 Tax=Ectocarpus siliculosus TaxI...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000595	Cyclic nucleotide-binding domain	PFAM	PF00027	cNMP_binding	coord: 39..68 e-value: 4.4E-7 score: 29.9
IPR000595	Cyclic nucleotide-binding domain	PROSITE	PS50042	CNMP_BINDING_3	coord: 31..73 score: 9.361
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 20..73 e-value: 1.0E-9 score: 40.3
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 28..71

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9782	contig	Ecto-sp9_F_contig9782:958..1509 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9782.17871.1	mRNA_Ecto-sp9_F_contig9782.17871.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9782 958..1509 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9782.17871.1 ID=prot_Ecto-sp9_F_contig9782.17871.1|Name=mRNA_Ecto-sp9_F_contig9782.17871.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=73bp
MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREG
DAPDGGLYFIVEGRVDVLVNSAG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000595	cNMP-bd_dom
IPR014710	RmlC-like_jellyroll
IPR018490	cNMP-bd-like