mRNA_Ecto-sp9_F_contig9782.17871.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9782.17871.1
Unique NamemRNA_Ecto-sp9_F_contig9782.17871.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.920e-39
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 219
            ME  EYEPEEA R A  EEDGL+MSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:    1 MEEHEYEPEEAERAAVGEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73
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BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.600e-35
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 219
            ME KE EPEEAG GA EEEDGL+MSDFEDLLLDHLKTTEY PGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:  760 MEDKEIEPEEAGTGATEEEDGLDMSDFEDLLLDHLKTTEYTPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 832
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.340e-7
Identity = 29/38 (76.32%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  106 KTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 219
            KT   P GE     GDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:  568 KTRLRPQGE-----GDAPDGGLYFIVEGRVDVLVNSAG 600
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9782.17871.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Cyclic4.920e-3990.41nucleotide-binding domain-containing protein n=1 T... [more]
cGMP-dependent4.600e-3591.78protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
cGMP-dependent6.340e-776.32protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9782contigEcto-sp9_F_contig9782:958..1509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclic nucleotide-binding domain
Ec32 orthologEc-03_002290.1
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.7209451-CDS-Ecto-sp9_F_contig9782:957..10331622931069.7209451-CDS-Ecto-sp9_F_contig9782:957..1033Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9782 958..1033 -
1692279018.5818417-CDS-Ecto-sp9_F_contig9782:957..10331692279018.5818417-CDS-Ecto-sp9_F_contig9782:957..1033Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9782 958..1033 -
1622931069.7380383-CDS-Ecto-sp9_F_contig9782:1366..15091622931069.7380383-CDS-Ecto-sp9_F_contig9782:1366..1509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9782 1367..1509 -
1692279018.5960526-CDS-Ecto-sp9_F_contig9782:1366..15091692279018.5960526-CDS-Ecto-sp9_F_contig9782:1366..1509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9782 1367..1509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9782.17871.1prot_Ecto-sp9_F_contig9782.17871.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9782 958..1509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9782.17871.1

>prot_Ecto-sp9_F_contig9782.17871.1 ID=prot_Ecto-sp9_F_contig9782.17871.1|Name=mRNA_Ecto-sp9_F_contig9782.17871.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=73bp
MEGKEYEPEEAGRGAAEEEDGLNMSDFEDLLLDHLKTTEYPPGEFVFREG
DAPDGGLYFIVEGRVDVLVNSAG
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mRNA from alignment at Ecto-sp9_F_contig9782:958..1509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9782.17871.1 ID=mRNA_Ecto-sp9_F_contig9782.17871.1|Name=mRNA_Ecto-sp9_F_contig9782.17871.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9782:958..1509- (Ectocarpus species9 EcSCA_722f female)
ATGGAGGGTAAGGAGTACGAGCCGGAGGAGGCGGGAAGGGGGGCCGCGGA
GGAAGAGGACGGGCTCAACATGTCGGACTTCGAGGACCTTCTTCTGGACC
ACCTGAAGACCACCGAGTACCCGCCCGGGGAGTTTGTCTTCAGGTGAACG
TTACCTTCTGTTTTTATTGTGGGTTGCTGTTGTTGCATTTATTTCTGCTT
GTCGCTTGACGTGTTCGAAGCATTCGCGTGTTTGATTCTCTTCTTGGGTC
ATCATTCGTCATGCGCCCCCCCCACCCCCCCTCCCCTGTGTTTTCATGAG
GAATACGCTGGCGTTTTTATTGAGGTATACATCGACTGGCCGTCGTGTTG
TAATCGAAGCTGTTGCTGTTGTTTCTGTTGTCGCTTTCGCTGTTGGTCGC
CGTCTTTACTGTTTTCGCCGGGTTTTTTTCTCTCTTTTTGGGCCATCTTT
GGGTCATTCCTGTTGCCTGTTTTCAGGGAGGGAGACGCGCCCGATGGTGG
CCTGTACTTCATAGTCGAAGGGCGCGTGGACGTGCTCGTGAACAGCGCGG
GC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9782:958..1509-

>mRNA_Ecto-sp9_F_contig9782.17871.1 ID=mRNA_Ecto-sp9_F_contig9782.17871.1|Name=mRNA_Ecto-sp9_F_contig9782.17871.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9782:958..1509- (Ectocarpus species9 EcSCA_722f female)
ATGGAGGGTAAGGAGTACGAGCCGGAGGAGGCGGGAAGGGGGGCCGCGGA
GGAAGAGGACGGGCTCAACATGTCGGACTTCGAGGACCTTCTTCTGGACC
ACCTGAAGACCACCGAGTACCCGCCCGGGGAGTTTGTCTTCAGATGGAGG
GTAAGGAGTACGAGCCGGAGGAGGCGGGAAGGGGGGCCGCGGAGGAAGAG
GACGGGCTCAACATGTCGGACTTCGAGGACCTTCTTCTGGACCACCTGAA
GACCACCGAGTACCCGCCCGGGGAGTTTGTCTTCAGGGAGGGAGACGCGC
CCGATGGTGGCCTGTACTTCATAGTCGAAGGGCGCGTGGACGTGCTCGTG
AACAGCGCGGGCGGAGGGAGACGCGCCCGATGGTGGCCTGTACTTCATAG
TCGAAGGGCGCGTGGACGTGCTCGTGAACAGCGCGGGC
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