prot_Ecto-sp9_F_contig978.17869.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig978.17869.1
Unique Nameprot_Ecto-sp9_F_contig978.17869.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length253
Homology
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BLAST of mRNA_Ecto-sp9_F_contig978.17869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB36_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.070e-43
Identity = 133/224 (59.38%), Postives = 137/224 (61.16%), Query Frame = 0 
Query:   30 MRTAFSTLALAALLAGVAAQSPIVDEGTTSENLPDDDYGYSTFTDISAPPDDTPSPVIADETTQGPGTADETPPPMGESTTLPPMSETAPPSMGGTEMSLSEIPPXXXXXXXXXXXXXXXXXXXXXXXXTDGTXXXXXAATGATDDLDXXXXXXXXXXXXXXXXXXDTADGDDAEVDAEAAGAASIMAKXXXXXXXXXXXXXXXX--WGGALAVGALGASALGL 251
            MR AFSTL L ALLAG AAQSPIV   TTS  LPDDDY YSTFTDISAPPD TPSPVI DE TQ P TADET PPMGESTTLPPMSETA PSMGGT+++LSE P                XXXXXXXXX DGT     AAT ATD+LD                  DTA                    XXXXXXXXXX        WGGALAVGALGASALGL
Sbjct:    1 MRIAFSTLVLVALLAGAAAQSPIVGTTTTSATLPDDDYRYSTFTDISAPPD-TPSPVIPDENTQRPRTADETSPPMGESTTLPPMSETAEPSMGGTQIALSETP------SPSAAATPGVXXXXXXXXXXDGTLAPSPAATDATDNLDETPVPSFSEEGVTDGDDEDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVVAAAAWGGALAVGALGASALGL 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig978.17869.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.070e-4359.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 155..172
score: 40.0
coord: 71..87
score: 36.47
coord: 115..136
score: 30.0
coord: 138..154
score: 62.35
coord: 100..112
score: 38.46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 49..252
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 44..48
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..48
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 32..43
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..48
score: 0.559
NoneNo IPR availableTMHMMTMhelixcoord: 222..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig978contigEcto-sp9_F_contig978:1032..5650 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig978.17869.1mRNA_Ecto-sp9_F_contig978.17869.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig978 1032..5650 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig978.17869.1 ID=prot_Ecto-sp9_F_contig978.17869.1|Name=mRNA_Ecto-sp9_F_contig978.17869.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=253bp
SCFVAWHTGPSVRKRRTELHGVAHARRRIMRTAFSTLALAALLAGVAAQS
PIVDEGTTSENLPDDDYGYSTFTDISAPPDDTPSPVIADETTQGPGTADE
TPPPMGESTTLPPMSETAPPSMGGTEMSLSEIPPPPPPTPHPTPPPPPPP
PPPPPPPPTDGTPAPSPAATGATDDLDETPAPSFSEEGVTDGDDEDTADG
DDAEVDAEAAGAASIMAKKGGAVAGGGVVVAAAAWGGALAVGALGASALG
LF*
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