mRNA_Ecto-sp9_F_contig978.17869.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig978.17869.1
Unique NamemRNA_Ecto-sp9_F_contig978.17869.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig978.17869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB36_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.070e-43
Identity = 133/224 (59.38%), Postives = 137/224 (61.16%), Query Frame = 1 
Query:   88 MRTAFSTLALAALLAGVAAQSPIVDEGTTSENLPDDDYGYSTFTDISAPPDDTPSPVIADETTQGPGTADETPPPMGESTTLPPMSETAPPSMGGTEMSLSEIPPXXXXXXXXXXXXXXXXXXXXXXXXTDGTXXXXXAATGATDDLDXXXXXXXXXXXXXXXXXXDTADGDDAEVDAEAAGAASIMAKXXXXXXXXXXXXXXXX--WGGALAVGALGASALGL 753
            MR AFSTL L ALLAG AAQSPIV   TTS  LPDDDY YSTFTDISAPPD TPSPVI DE TQ P TADET PPMGESTTLPPMSETA PSMGGT+++LSE P                XXXXXXXXX DGT     AAT ATD+LD                  DTA                    XXXXXXXXXX        WGGALAVGALGASALGL
Sbjct:    1 MRIAFSTLVLVALLAGAAAQSPIVGTTTTSATLPDDDYRYSTFTDISAPPD-TPSPVIPDENTQRPRTADETSPPMGESTTLPPMSETAEPSMGGTQIALSETP------SPSAAATPGVXXXXXXXXXXDGTLAPSPAATDATDNLDETPVPSFSEEGVTDGDDEDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVVAAAAWGGALAVGALGASALGL 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig978.17869.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.070e-4359.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig978contigEcto-sp9_F_contig978:1032..5650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_002050.1
Exons4
Model size760
Cds size759
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig978.17869.1prot_Ecto-sp9_F_contig978.17869.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig978 1032..5650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.439448-CDS-Ecto-sp9_F_contig978:1031..11791622931069.439448-CDS-Ecto-sp9_F_contig978:1031..1179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 1032..1179 +
1692279018.4292836-CDS-Ecto-sp9_F_contig978:1031..11791692279018.4292836-CDS-Ecto-sp9_F_contig978:1031..1179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 1032..1179 +
1622931069.4569216-CDS-Ecto-sp9_F_contig978:3032..31391622931069.4569216-CDS-Ecto-sp9_F_contig978:3032..3139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 3033..3139 +
1692279018.4395397-CDS-Ecto-sp9_F_contig978:3032..31391692279018.4395397-CDS-Ecto-sp9_F_contig978:3032..3139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 3033..3139 +
1622931069.4835424-CDS-Ecto-sp9_F_contig978:4214..43521622931069.4835424-CDS-Ecto-sp9_F_contig978:4214..4352Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 4215..4352 +
1692279018.450126-CDS-Ecto-sp9_F_contig978:4214..43521692279018.450126-CDS-Ecto-sp9_F_contig978:4214..4352Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 4215..4352 +
1622931069.5018516-CDS-Ecto-sp9_F_contig978:5284..56501622931069.5018516-CDS-Ecto-sp9_F_contig978:5284..5650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 5285..5650 +
1692279018.4613938-CDS-Ecto-sp9_F_contig978:5284..56501692279018.4613938-CDS-Ecto-sp9_F_contig978:5284..5650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig978 5285..5650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig978.17869.1

>prot_Ecto-sp9_F_contig978.17869.1 ID=prot_Ecto-sp9_F_contig978.17869.1|Name=mRNA_Ecto-sp9_F_contig978.17869.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=253bp
SCFVAWHTGPSVRKRRTELHGVAHARRRIMRTAFSTLALAALLAGVAAQS
PIVDEGTTSENLPDDDYGYSTFTDISAPPDDTPSPVIADETTQGPGTADE
TPPPMGESTTLPPMSETAPPSMGGTEMSLSEIPPPPPPTPHPTPPPPPPP
PPPPPPPPTDGTPAPSPAATGATDDLDETPAPSFSEEGVTDGDDEDTADG
DDAEVDAEAAGAASIMAKKGGAVAGGGVVVAAAAWGGALAVGALGASALG
LF*
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mRNA from alignment at Ecto-sp9_F_contig978:1032..5650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig978.17869.1 ID=mRNA_Ecto-sp9_F_contig978.17869.1|Name=mRNA_Ecto-sp9_F_contig978.17869.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4619bp|location=Sequence derived from alignment at Ecto-sp9_F_contig978:1032..5650+ (Ectocarpus species9 EcSCA_722f female)
TCCTGCTTCGTAGCGTGGCACACGGGTCCATCTGTCCGCAAAAGAAGAAC
AGAATTACACGGAGTGGCACACGCACGCCGTCGAATCATGAGGACTGCTT
TCTCGACGCTGGCATTGGCGGCTCTGTTGGCCGGGGTTGCTGCTCAGAGT
GAGTGTGATTGTTGGCTGCGCTGCTGGCTTACCCTCCTGTGGTGCTCTTG
CAGGATATTTTGAAGGATCAACAGGGTCGATCCGTTTTTTTTGAAATTGT
TCGGTCTGGGCGTGACACACATCATGAAGGACGACGTAGAGAAAAAAACG
AGAGACAGACAACCCACCCACTCTACGCTGCTAATGTAGCGTCCTCTCAG
CTACCGGCTGTCTGTGTGTCTCTCTGTATCTCTTTGTCTCTCGTTCTCTC
CTCACGGAGGTGTGTCGCTGTCCGGGAGCGATCGACGTGGCCGAAGTTGT
GTGCGTGCCTATGCACTACTCATGTTGTCCAGCTTGCCAGAGAGAGGATG
CAATATTGGCTGGCTGCCCACCTTGCCGCGCTGCTGCTGTTCAATCACAC
ACACGCGTCACATGATGTGCCAGCCTCTCACACGGCGGCAAGGGCTTCAT
CTTTTTTTTGGGGTGCCTACATCGCTATCTTTCACCACTGGTGGGTGTAC
ACCATGTACTCAGACGTTGTAGTCCGGAGACATTGCATTGCTGTCTGAGT
TGTCTCACAAATCTGTGTCCGCAGCTTTATTACACCTGGCACGCAAAAAA
AATCGCCGCTCGCATCAACCCGTCGGTGACCGGTGACACAATATATAACT
CCGTATACAACACGCCGAAGCGATTTTCAAATCTCGATTACGAAGAGGAT
GCACAATATGAGACGATGCATGTATTATATTGCTCCGGAAAGCTCTCGAC
GAGACGGCTTCAACCCCGCCGTTTTCGGTGCCGCCGCTGTTTTCTGTTTC
GCAGTGACCGAGGTTTGAAAATCGGTCTGGTTGGTCGGTACCAAAAATTT
CATCGGCGACACACACCATTGCACCAATGCATCATACACATTCGTATGCA
TACTATTTATGTACTTTCCATTAGACCGGTAAACCCCGACGGTTGTCTGC
AGTACGTTAGCATCGGCTCCGATGTGCGTTGTCTCTGCTCTCCCTGTCGC
ACGCGGGACCGGGTTGATCACATGTTTAGAATGCCGTTATTTACCCTCCC
GGGGTATCTATTTTCCGTTTGGATCTTGCAGCAGCGGTAGGCAGGAGGTT
GGATCTACATAGATATAAAAGACATGGTGCATCTTCCCCATATCAGAGAC
ATGACTGCTGTAATGGCACAGCAGTAGTACTGCGTGTAGGGCTGTGCACA
TTGCTCAATATGCGTGCTTTTATGTTGGTCTGCCTCTTGGTCTCTGCTGG
TCTCTATGGCGCATGTTTTTTCCTCTTTGGCGAGGTACGCCAGAGATCTT
TCGGCACACAAAGTTATCGCGCTGCTATCGTGCCTGTAGTCACGTAAGGG
TAAGCCTTTATGTACACCTCAATTCTACTATAAGTTATAGGTTTCAGGGC
GATTTTCCATATCGGCGTTGATACACACCACAAAAAAATAGTTCAATACC
AAATTTGGATTTGAATGGCAACACGAAGCGAGGGGCGGGGTAGTATATTT
GTACGTCCCTGCATGGACTCCGGGAGCCCCCCCTGGTTGTACCGATACTG
CTGTAAACACTTCGTGTGCCATGTGCACGCGTGTGACAGTAGTTGACAAA
AATTCGTTTGTGACGCAGTCGCGGGAAGATGGATCTTCCAATGATATGGA
AGATCTGTCAAAAACGTGAATGACGTGTCGCCGTCGTTTGGGTCCATCTT
TGGCGGAAGCCGTAAAACATTGTGAGCGTATCCTCGCGCAGACAAGAATG
ATCGATCACGTTTCCCCACACGACTGATGGCACTAGTTTTTGACCACGAC
GACCGTCGCCCCCACCCACCCGTGTGCGTGTGCCTCTCTCTCTCTCTGCA
GGCCCCATCGTGGACGAGGGTACGACGTCTGAGAACCTCCCCGATGATGA
CTACGGGTACAGCACGTTCACTGATATCAGCGCACCGCCCGACGACACTC
CTTCACCGGTGCGGGGGTGATGGCACACAGCCGTACGATAGTAGTAGTTC
CTGCATCTTGTTTGGAAAGTATGCGTACGAACACGGAAAGACTACCGATC
CGGTCGAGATCTGTCCACAGTCTCAAGGGGATGTGTTGAAGTCTCTGTAC
TTGCAGTGAGTGGAAGCAAAAACGGCTGGATACTTGACTTTTTTTGAGTC
TGTCAGAACCGTTGTTCATGGAAGAATGATATCTGTTTCACATTTGCGAC
GATTTTCATTTTATGTTTGCCCAATGATACTTGTACATGAGTGCCTGCAT
GACTTTCGATTTTCCTCCGGACTAGCCACGTGGATTTATTTTTCACAAAC
CTTTTTGTTCGGCGAGGTGATTGGGTGTTGGTGTCTGGATGTTGCGTGTT
TTCTCGTACATTCCAGTTTGTTGCGGGCAAGACTGCTGCTGTAAACGGTG
ACTCCACGGAATTGCGTTTCTCTCCCCTCGGGTATTAATATTTTTCCGAG
ATTACGAGAGGTCTACCTTGTTAAGGCAGCCCAAACATCAGCACACAATA
GACAAGAAACAGATGTGTTGTCAAGTGGTACGATCCAACGTGGTCGCTCT
CCCCGTGCGTACCTACTACCCTCGGCTAGTTGTTGCTGTTGTTGATCCAA
GCTTGATCGTTGCAACGTACCATCCAATATCGTCGCTCTCCCCATGCTTG
CCTAACCCTCGGCGACCTTGTTGCCTTTCTCGGCCCGAGCTTGGTTGTCT
CCATTTCGACGTGAAGCGGAAATGGTCCCTCTGCAACTGAAATACGCCAC
GACCATTATTATCTCGAGCCCAAGAGAGCATCCCAGAACAATGTGTGCCG
TTTCACTGCCAGTCTGGCGTTGTTCTTGCACATGCGACCTTTTCCCTCTC
CGGGTATGTACGATACATGCCATGGCGTCTCGGTTGGTTTGGCCTGTGCC
GCCGTGTCACCAGTGCCCCGCCTCTCTCTGCTGCATCGATCCGGACGTCC
CAACTATTGCGCCATTCCAAACCCACCCCTTTCCTCTACGGTCCGCGTTC
GTCGTGCTTGTGTTTGATGCCACGATAATAAAGGTGATCGCCGATGAGAC
TACGCAAGGGCCGGGCACTGCGGACGAAACCCCTCCGCCTATGGGGGAGT
CGACGACGCTCCCGCCCATGTCCGAGACAGCTCCCCCCTCCATGGGGGGC
ACCGAGATGTCTCTTTCCGAGGTGAGAGTTCGTCTTGCTATTTTCGTTTT
TCGTTCTTGTCTGCCACCCGGGGTTATAGTGTAACGCCGGCGGCACAAGC
GCCAAGTGGTTCCGGGCCACTCATTCAGAGCTGCGCACTTCGCAGTTGGT
ACACTAATTGTATCATCGGGTTGCCATTGCGTCGCGCCATCGCGCTGCGC
GCGGAGGAAAGTGCAAGTGTTTTCGTTTGCGACGGTTTCTGTAATCGTTG
CGCCGTACGCACTGAACCAAGCATGGAAGACACATCCTGCAGCCTACAAC
CTCCCGGTAGCAAAAGGCCCATTTAGTACGACCGCTTCAGAGACAACACT
AACGGAGGGCGAGCACAGAAAACCAACGAAAAAGCTGGAAGACTAACCGA
TGCCGTATGGACAACACATCATCAGTCCTTGGCACACGCCATCACCTAAC
GCGGTACCTGGCAACCAAGCTGCTGCGTACGAGAAACAGCTTTTCATATG
ACCTTTGCGCCTGACGTCCGGCAAGGCACAAAACACAGATGACGCATCAG
ATAGAGGCCCACAGCACGAAGAAAAACACAACAGATAATTCTCGTCATGT
GCCGTACTCCGTATTGTTCAGTATCGCACCCGGCGCTTCGGGGGGGGTGT
GTTGGACAAAGCTAGGTAGGGCGAAATGGTTTACTGATATTTCCGCACCG
GGTACGGTGGATTCGCCCGCCTCGGGGGTATGGCACCGGGGTGCGATGGT
GAGCAAAGCCAGTATAGGAATGATGTTTAAGGAGACTATCTTACGCCGGT
GCCCTGACCTGCACATTTTCGGTACCTTGTTATCCCTGTTCTGTTCCTCT
CTCTCTCTTTCCACCATTCTCCGCCCCTGAGTTTCTGCTCCCCCCCCACC
AACTACTGTATATGATCAGTGCTAGACGTCGCTCTCTCTCGGATTTCATT
CAGATCCCCCCCCCCCCCCCCCCCACACCCCACCCCACCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGACGGCACCCCCG
CGCCCTCTCCGGCCGCCACGGGCGCCACCGACGACTTGGACGAGACCCCG
GCGCCGTCGTTCTCTGAGGAAGGCGTTACGGACGGGGACGACGAAGACAC
GGCGGACGGGGACGACGCCGAGGTGGATGCCGAGGCCGCGGGGGCGGCTT
CGATCATGGCGAAGAAGGGCGGCGCCGTCGCCGGCGGCGGCGTTGTTGTT
GCGGCTGCCGCGTGGGGAGGGGCGTTGGCGGTCGGGGCCCTCGGCGCTTC
CGCGCTCGGGCTGTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig978:1032..5650+

>mRNA_Ecto-sp9_F_contig978.17869.1 ID=mRNA_Ecto-sp9_F_contig978.17869.1|Name=mRNA_Ecto-sp9_F_contig978.17869.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp9_F_contig978:1032..5650+ (Ectocarpus species9 EcSCA_722f female)
TCCTGCTTCGTAGCGTGGCACACGGGTCCATCTGTCCGCAAAAGAAGAAC
AGAATTACACGGAGTGGCACACGCACGCCGTCGAATCATGAGGACTGCTT
TCTCGACGCTGGCATTGGCGGCTCTGTTGGCCGGGGTTGCTGCTCAGATC
CTGCTTCGTAGCGTGGCACACGGGTCCATCTGTCCGCAAAAGAAGAACAG
AATTACACGGAGTGGCACACGCACGCCGTCGAATCATGAGGACTGCTTTC
TCGACGCTGGCATTGGCGGCTCTGTTGGCCGGGGTTGCTGCTCAGAGCCC
CATCGTGGACGAGGGTACGACGTCTGAGAACCTCCCCGATGATGACTACG
GGTACAGCACGTTCACTGATATCAGCGCACCGCCCGACGACACTCCTTCA
CCGGCCCCATCGTGGACGAGGGTACGACGTCTGAGAACCTCCCCGATGAT
GACTACGGGTACAGCACGTTCACTGATATCAGCGCACCGCCCGACGACAC
TCCTTCACCGGTGATCGCCGATGAGACTACGCAAGGGCCGGGCACTGCGG
ACGAAACCCCTCCGCCTATGGGGGAGTCGACGACGCTCCCGCCCATGTCC
GAGACAGCTCCCCCCTCCATGGGGGGCACCGAGATGTCTCTTTCCGAGGT
GATCGCCGATGAGACTACGCAAGGGCCGGGCACTGCGGACGAAACCCCTC
CGCCTATGGGGGAGTCGACGACGCTCCCGCCCATGTCCGAGACAGCTCCC
CCCTCCATGGGGGGCACCGAGATGTCTCTTTCCGAGATCCCCCCCCCCCC
CCCCCCCACACCCCACCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCACCGACGGCACCCCCGCGCCCTCTCCGGCCGCC
ACGGGCGCCACCGACGACTTGGACGAGACCCCGGCGCCGTCGTTCTCTGA
GGAAGGCGTTACGGACGGGGACGACGAAGACACGGCGGACGGGGACGACG
CCGAGGTGGATGCCGAGGCCGCGGGGGCGGCTTCGATCATGGCGAAGAAG
GGCGGCGCCGTCGCCGGCGGCGGCGTTGTTGTTGCGGCTGCCGCGTGGGG
AGGGGCGTTGGCGGTCGGGGCCCTCGGCGCTTCCGCGCTCGGGCTGTTTT
GAATCCCCCCCCCCCCCCCCCCCACACCCCACCCCACCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGACGGCACCCCCGC
GCCCTCTCCGGCCGCCACGGGCGCCACCGACGACTTGGACGAGACCCCGG
CGCCGTCGTTCTCTGAGGAAGGCGTTACGGACGGGGACGACGAAGACACG
GCGGACGGGGACGACGCCGAGGTGGATGCCGAGGCCGCGGGGGCGGCTTC
GATCATGGCGAAGAAGGGCGGCGCCGTCGCCGGCGGCGGCGTTGTTGTTG
CGGCTGCCGCGTGGGGAGGGGCGTTGGCGGTCGGGGCCCTCGGCGCTTCC
GCGCTCGGGCTGTTTTGA
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