prot_Ecto-sp9_F_contig977.17865.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig977.17865.1
Unique Name	prot_Ecto-sp9_F_contig977.17865.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	759

Homology

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BLAST of mRNA_Ecto-sp9_F_contig977.17865.1 vs.
Match: E3 (ubiquitin protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U9_ECTSI)

HSP 1 Score: 1271 bits (3290), Expect = 0.000e+0
Identity = 741/757 (97.89%), Postives = 748/757 (98.81%), Query Frame = 0

Query:    1 MKRGVSDTGAATSPGPSKLQKTSSGSDGDNGGPDAKFILQQQNHELAVDMRRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAWRQVLSDLSTAAGELGLGPRPLNVTVAPGGDDXXXXXXXXXXXXXEEGEVIMVSVKDGLSVPVEGQEPASELSIMQKLIMPAAEVLAMDATEFSCGDRLLKGMGKKPEKSEEGASARERLAGMAGTSNAFYDLDTDGYGLKSRESVKSEAAADIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFLSDELTQARKRCMELSESVTSLRESCRKANRTLDKLAADGVIVEVPSEKGTSGSGGRRGSAEGGAAXXXXXXXSTYSVGTGYKRGVNGAGDAEDLLAALEEAQTLAETRLKEMERWRTEKTEAERELTQFKASTELETKKADLSGHPQFQRLSTQLEAEQDMLKLEKARVTELEGQIKQMAGQVEQHEMALQQQMEQQRLRWKSEIVSSNSMLNTAHEDLDKAQGKLKHEQRFGSGMLKSVTIAKEEAERLLKQTEQQVSILKASLDRATKAKEHAEAQAAKDRARLERQGAXXXXXXXXXREDENLRAKLADSLRQLEGSKAIEDALQSELNTTLAAYAQSKEGNQKLVQEMTRISASRKELSDEVTSTKAQLKNRAKVRATMELQIKTAMQMRDQGHALKQKALDLVAEAEEKVQHERKQNLELAREVHTEKAHADRARQEVDFLTQTKQAVETAH 757
            MKRGVSDTGAATSPGPSKLQKTSSGSDGDNGGPDAK ILQQQNHELAVDMRRRKRQEAELEKKL QAWARQGHFDATLS+VNRAWRQVLSDLSTAAGELGLGPRPLNVTVAPGGD XXXXXXXXXX   EEGEVIMVSVKDGLSVPVEGQEPASELSIMQKLIMPA+EVLAMDATEFSCGDRLLKGMGKKPEKSEE AS+RERLAGMAGTSNAFYDLDTDGYGLKSRESVK+EAA DIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFLSDELTQARKRCMELSESVTSLRE+CRKANRTLDKLAADGVIVEVPSEKGTSG+GGRRGSAEGGAAXXXXXXXSTYSVGTGYKRGVNGAGD EDLLAALEEAQTLAETRLKEMERWRTEKTEAERELTQFKASTELETKKADLSGHPQFQRLSTQLEAEQDMLKLEKARVTELEGQIKQM+GQVEQHEMALQQQMEQQRLRWKSEIVSSNSMLNTAHEDLDKAQGKLKHEQRFGSGMLKSVTIAKEEAERLLKQTEQQVSILKASLDRATKAKEHAEAQAAKDRARLERQGAXXXXXXXXXREDENLRAKLADSLRQLEGSKAIEDALQSELNTTLAAYAQSKEGNQKLVQEMTRISASRKELSDEVTSTKAQLKNRAKVRATMELQIKTAMQMRDQGHALKQKALDLVAEAEEKVQHERKQNLELAREVHTEKAHADRARQEVDFLTQTKQAVETAH
Sbjct:    1 MKRGVSDTGAATSPGPSKLQKTSSGSDGDNGGPDAKSILQQQNHELAVDMRRRKRQEAELEKKLTQAWARQGHFDATLSSVNRAWRQVLSDLSTAAGELGLGPRPLNVTVAPGGDXXXXXXXXXXX---EEGEVIMVSVKDGLSVPVEGQEPASELSIMQKLIMPASEVLAMDATEFSCGDRLLKGMGKKPEKSEEAASSRERLAGMAGTSNAFYDLDTDGYGLKSRESVKAEAATDIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFLSDELTQARKRCMELSESVTSLRENCRKANRTLDKLAADGVIVEVPSEKGTSGTGGRRGSAEGGAAXXXXXXXSTYSVGTGYKRGVNGAGDVEDLLAALEEAQTLAETRLKEMERWRTEKTEAERELTQFKASTELETKKADLSGHPQFQRLSTQLEAEQDMLKLEKARVTELEGQIKQMSGQVEQHEMALQQQMEQQRLRWKSEIVSSNSMLNTAHEDLDKAQGKLKHEQRFGSGMLKSVTIAKEEAERLLKQTEQQVSILKASLDRATKAKEHAEAQAAKDRARLERQGAXXXXXXXXXREDENLRAKLADSLRQLEGSKAIEDALQSELNTTLAAYAQSKEGNQKLVQEMTRISASRKELSDEVTSTKAQLKNRAKVRATMELQIKTAMQMRDQGHALKQKALDLVAEAEEKVQHERKQNLELAREVHTEKAHADRARQEVDFLTQTKQAVETAH 754

[Close]

BLAST of mRNA_Ecto-sp9_F_contig977.17865.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC3_9PHAE)

HSP 1 Score: 454 bits (1167), Expect = 2.240e-151
Identity = 268/322 (83.23%), Postives = 274/322 (85.09%), Query Frame = 0

Query:   28 GDNGGPDAKFILQQQNHELAVDMRRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAWRQVLSDLSTAAGELGLGPRPLNVTVAPGGDDXXXXXXXXXXXXXEEGEVIMVSVKDGLS-------------------------------------------VPVEGQEPASELSIMQKLIMPAAEVLAMDATEFSCGDRLLKGMGKKPEKSEEGASARERLAGMAGTSNAFYDLDTDGYGLKSRESVKSEAAADIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFLSDELTQ 306
            GDNGGPDAK IL+QQNHELAVDMRRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAWRQVLSDLSTAAGELGLGPRPLNV+VAPGGD XXXXXXXXXXX  EEGEVIMVSVKDGLS                                           VPVEG+EPASELSIMQKLIMPAAE+LAMDATEFSCGDRLLKGMGKKPEKSEE ASARERLAGMAGTSNAFYDLDTDGYGLKSRESVK+EAAADIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESR+DTLDKAQLEMVGKKKRLEAERDFLSDELTQ
Sbjct:   11 GDNGGPDAKSILRQQNHELAVDMRRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAWRQVLSDLSTAAGELGLGPRPLNVSVAPGGDXXXXXXXXXXXX--EEGEVIMVSVKDGLSGETFLLFFSQSDTPHSHYIMDANTSDALRPSSHRVLLPTQWTPVPVEGREPASELSIMQKLIMPAAEILAMDATEFSCGDRLLKGMGKKPEKSEEAASARERLAGMAGTSNAFYDLDTDGYGLKSRESVKAEAAADIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRRDTLDKAQLEMVGKKKRLEAERDFLSDELTQ 330

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig977.17865.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig977.17865.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
E3	0.000e+0	97.89	ubiquitin protein ligase n=1 Tax=Ectocarpus silicu...	[more]
Uncharacterized	2.240e-151	83.23	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 736..756
None	No IPR available	COILS	Coil	Coil	coord: 701..728
None	No IPR available	COILS	Coil	Coil	coord: 405..432
None	No IPR available	COILS	Coil	Coil	coord: 455..496
None	No IPR available	COILS	Coil	Coil	coord: 290..338
None	No IPR available	COILS	Coil	Coil	coord: 645..665
None	No IPR available	COILS	Coil	Coil	coord: 537..585
None	No IPR available	PANTHER	PTHR23163:SF0	E3 UBIQUITIN-PROTEIN LIGASE BRE1	coord: 17..753
IPR013956	E3 ubiquitin ligase Bre1	PANTHER	PTHR23163	RING FINGER PROTEIN-RELATED	coord: 17..753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig977	contig	Ecto-sp9_F_contig977:16143..27900 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig977.17865.1	mRNA_Ecto-sp9_F_contig977.17865.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig977 15262..27900 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig977.17865.1 ID=prot_Ecto-sp9_F_contig977.17865.1|Name=mRNA_Ecto-sp9_F_contig977.17865.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=759bp
MKRGVSDTGAATSPGPSKLQKTSSGSDGDNGGPDAKFILQQQNHELAVDM
RRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAWRQVLSDLSTAAGELG
LGPRPLNVTVAPGGDDKDDDEDDDDDENKEEGEVIMVSVKDGLSVPVEGQ
EPASELSIMQKLIMPAAEVLAMDATEFSCGDRLLKGMGKKPEKSEEGASA
RERLAGMAGTSNAFYDLDTDGYGLKSRESVKSEAAADIAELDKALKEKAR
FTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFL
SDELTQARKRCMELSESVTSLRESCRKANRTLDKLAADGVIVEVPSEKGT
SGSGGRRGSAEGGAAGLGGGAGSTYSVGTGYKRGVNGAGDAEDLLAALEE
AQTLAETRLKEMERWRTEKTEAERELTQFKASTELETKKADLSGHPQFQR
LSTQLEAEQDMLKLEKARVTELEGQIKQMAGQVEQHEMALQQQMEQQRLR
WKSEIVSSNSMLNTAHEDLDKAQGKLKHEQRFGSGMLKSVTIAKEEAERL
LKQTEQQVSILKASLDRATKAKEHAEAQAAKDRARLERQGASAGAGGGGG
REDENLRAKLADSLRQLEGSKAIEDALQSELNTTLAAYAQSKEGNQKLVQ
EMTRISASRKELSDEVTSTKAQLKNRAKVRATMELQIKTAMQMRDQGHAL
KQKALDLVAEAEEKVQHERKQNLELAREVHTEKAHADRARQEVDFLTQTK
QAVETAHR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013956	E3_ubiquit_lig_Bre1