prot_Ecto-sp9_F_contig9747.17846.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9747.17846.1
Unique Name	prot_Ecto-sp9_F_contig9747.17846.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	119

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX8_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.350e-68
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 119
            MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSA EPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE
Sbjct:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSASEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 119

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BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW60_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.100e-64
Identity = 116/119 (97.48%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 119
            M EP LERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTAL LLQENAKQWESLEPAVKLWTERDNDE
Sbjct:    1 MSEPRLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALGLLQENAKQWESLEPAVKLWTERDNDE 119

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	1.350e-68	99.16	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
HTH	1.100e-64	97.48	La-type RNA-binding domain-containing protein n=1 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9747	contig	Ecto-sp9_F_contig9747:218..1080 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9747.17846.1	mRNA_Ecto-sp9_F_contig9747.17846.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9747 218..1080 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9747.17846.1 ID=prot_Ecto-sp9_F_contig9747.17846.1|Name=mRNA_Ecto-sp9_F_contig9747.17846.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSIS
EERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAK
QWESLEPAVKLWTERDNDE