prot_Ecto-sp9_F_contig9728.17831.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9728.17831.1
Unique Nameprot_Ecto-sp9_F_contig9728.17831.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length170
Homology
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.040e-76
Identity = 124/137 (90.51%), Postives = 125/137 (91.24%), Query Frame = 0
Query:   31 VVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWE 167
            VVES+AFAPESAER LATAVGS G        AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE
Sbjct:  288 VVESIAFAPESAERALATAVGSEGGGGGEG--AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWE 422          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 169 bits (429), Expect = 6.860e-48
Identity = 80/180 (44.44%), Postives = 115/180 (63.89%), Query Frame = 0
Query:    2 LASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERT---------LATAVGS----AGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 168
            LASCGND ++  W +   + L  LREH HVVESV FA    +           LA+ VG+    A           + +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++D+++R FD++TGRC R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC
Sbjct:  247 LASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPLDAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUP0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.870e-47
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = 0
Query:    1 MLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRR------FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWE 167
            +LA+ GND  + V+   S + L +LR H HV+ES+AF   +A     T+   A           RRR      ++ASGSRD+TVKLW+     CLM+F  HENWVR VL+HP+G F++S  DD+S+R +D+K  RC R ++ AH HFVT++AMH T P++VSGGVD+ +  W+
Sbjct:   14 LLATSGNDRVIMVYDAESRKKLCELRGHDHVIESLAFLTCAA-----TSAADAPKSATKLTPEERRRKEEIRDYLASGSRDRTVKLWSIKAASCLMSFESHENWVRGVLIHPNGKFLISCGDDKSIRVYDIKANRCLRTIDGAHSHFVTSIAMHHTLPVLVSGGVDQSVKCWQ 181          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 9.430e-47
Identity = 82/192 (42.71%), Postives = 115/192 (59.90%), Query Frame = 0
Query:    2 LASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESA-----ERTLATAVGSAGXXXXXXXXAV--------------------RRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 168
            LASCGND S+  W +   + L  +REH HVVESVAFA   A     ER  A  + + G        A                     R +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++DR++R +D++TGRC R L++AH HF+T+  +H + P++V+GG+D+ ++VWEC
Sbjct:  264 LASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 165 bits (417), Expect = 6.060e-46
Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = 0
Query:    2 LASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAER-----------------TLATAVGSAGXXXXXXXXAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 168
            LASCGND S+  W +   + L  LREH HVVESV FA   A+                  +  TA+  +G        A  R+  F+ SGSRD+TV+LW A     LM+FS HENWVRCV  HP G + +S ++DR++R  D++TGRC R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC
Sbjct:  261 LASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Platelet-activating (factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.930e-44
Identity = 82/178 (46.07%), Postives = 108/178 (60.67%), Query Frame = 0
Query:    1 MLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL------ATAVGSAGXXXXXXXXA---VRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR 169
            +LAS G+D  V VW++ +   +  LREH+HVVE+VAF P      +      +T +GS          +       ++ SGSRDKT+ LWNA  G CL+  + HENWVR V  HPSG F+LS SDDRS+R FD+   RC R L DAH  FV+ALA H T P + +G V+RE+ +WECR
Sbjct:  260 LLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQSQGSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Ge1_WD40 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.730e-42
Identity = 79/94 (84.04%), Postives = 79/94 (84.04%), Query Frame = 0
Query:   33 ESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 126
            ESVAFAPESAERTLATAVG               RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK
Sbjct:  224 ESVAFAPESAERTLATAVG---------------RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y8Q0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.080e-42
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 0
Query:    3 ASCGNDHSVKVWSVHSGQCLH--DLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWE 167
            AS GND  ++V+   + + L    LR H HV+E++AF  E       T+ G  G           R ++ASG RD+TV+LWN     C+  FS HENWVR VL+HPSG +++SA+DD+S+R FD+K  RC R LE+AH HFVTA+ MH T PI+VSG VD+ +  W+
Sbjct:  306 ASAGNDQVIRVYEQDNTKSLPLATLRGHEHVIEALAFICEQ------TSGGKLGMKSTSNADTNPRDYLASGGRDRTVRLWNLMDESCMAVFSSHENWVRAVLIHPSGQYIVSAADDKSIRVFDIKAQRCLRSLENAHDHFVTAIDMHSTLPILVSGSVDQTVKCWQ 466          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Platelet-activating (factor acetylhydrolase beta subunit-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7T8_THAPS)

HSP 1 Score: 148 bits (373), Expect = 1.720e-39
Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 0
Query:   24 DLREHTHVVESVAFAPES--------AERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWN-ASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWE 167
            +LR H HVVES++F   S        A R   +A   A              ++ASGSRD+TV+LW  A+ G CLMTF  HENWVR VL+HPSG  +LS  DDRS+R FD+K+ RC R +EDAH HFVT++AMH T PI+VSGGVD  +  W+
Sbjct:  302 ELRGHDHVVESLSFLCSSLLPKKGSAASRPTTSAAEGASSSW---------EYLASGSRDRTVRLWTVANGGSCLMTFRAHENWVRGVLIHPSGNHILSCGDDRSIRVFDIKSNRCLRTIEDAHPHFVTSMAMHYTLPILVSGGVDHAVKCWQ 445          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TW91_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 3.640e-38
Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    3 ASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAV----GS-------AGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDV-KTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 168
            ASC  DH+V+VW     + L   R+H HVV+++AF+ E A++ L   V    GS       AG        +   +F+AS SRDKT+K+++   G  +   + HENWVR VL HPSG ++LS +DD+++R +D+ K  RC + LEDAH  FVT +  + + P++ SGGVD  + +WEC
Sbjct:    1 ASCSIDHTVRVWDFKKAEELITFRDHKHVVDAIAFSHERADKVLLKHVQGTNGSKEAETKTAGVKSTETSSSYTPQFIASASRDKTIKIFHIPSGAIVADINGHENWVRGVLFHPSGKYLLSCADDQTIRVWDLEKRFRCRKILEDAHDPFVTCIDWNMSRPVLASGGVDNIMKIWEC 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lissencephaly-11.040e-7690.51homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.860e-4844.44protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical4.870e-4745.09protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Lissencephaly-19.430e-4742.71homolog n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Lissencephaly-16.060e-4642.47homolog n=2 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Platelet-activating2.930e-4446.07factor acetylhydrolase ib subunit alpha n=2 Tax=Mo... [more]
Ge1_WD406.730e-4284.04domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Lissencephaly-18.080e-4246.11homolog n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Platelet-activating1.720e-3950.33factor acetylhydrolase beta subunit-like protein (... [more]
Hypothetical3.640e-3840.45protein n=1 Tax=Lotharella oceanica TaxID=641309 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 69..83
score: 43.7
coord: 2..16
score: 32.66
coord: 154..168
score: 29.65
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 85..124
e-value: 3.4E-7
score: 39.9
coord: 18..82
e-value: 2.9E-7
score: 40.1
coord: 127..167
e-value: 7.5E-5
score: 32.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 19..82
e-value: 5.0E-6
score: 27.2
coord: 129..166
e-value: 2.9E-4
score: 21.6
coord: 86..123
e-value: 1.4E-7
score: 32.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 67..91
score: 9.305
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 92..133
score: 11.678
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..169
score: 11.611
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..24
score: 10.375
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..169
e-value: 1.9E-50
score: 173.4
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 2..169
NoneNo IPR availablePANTHERPTHR44129:SF7coord: 2..169
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 69..83
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 154..168
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..169
score: 28.818
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9728contigEcto-sp9_F_contig9728:1235..4862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9728.17831.1mRNA_Ecto-sp9_F_contig9728.17831.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9728 677..4946 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9728.17831.1 ID=prot_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAV
GSAGGGGGGGAGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVR
CVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKT
SPIVVSGGVDRELHVWECR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf