mRNA_Ecto-sp9_F_contig9728.17831.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9728.17831.1
Unique NamemRNA_Ecto-sp9_F_contig9728.17831.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 4.380e-92
Identity = 163/241 (67.63%), Postives = 169/241 (70.12%), Query Frame = 1
Query:    1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*RWGHGGEMGQG-----WNTI--YIG-FGSYFSALFLCNMSRIQ 699
            +AATGFCTRTLKGDSEWVRRVALSDDG                               VVES+AFAPESAER LATAVGS G        AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE     G  G  G G     W  +  Y+  F   F  +   +MSRIQ
Sbjct:  230 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAVGSEGGGGGEG--AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWELSLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVIFVHMSRIQ 468          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.170e-56
Identity = 99/222 (44.59%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESA-----ERTLATAVGSAGXXXXXXXXAV--------------------RRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            + ATG+C  TL G  S+WVR VA+SDDG  LASCGND S+  W +   + L  +REH HVVESVAFA   A     ER  A  + + G        A                     R +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++DR++R +D++TGRC R L++AH HF+T+  +H + P++V+GG+D+ ++VWEC
Sbjct:  234 ELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 197 bits (502), Expect = 1.180e-55
Identity = 92/208 (44.23%), Postives = 134/208 (64.42%), Query Frame = 1
Query:    7 ATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERT---------LATAVGS----AGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            +TG+C  T+  G ++WVR + +SDDG  LASCGND ++  W +   + L  LREH HVVESV FA    +           LA+ VG+    A           + +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++D+++R FD++TGRC R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC
Sbjct:  219 STGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPLDAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Ge1_WD40 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.360e-55
Identity = 105/154 (68.18%), Postives = 106/154 (68.83%), Query Frame = 1
Query:    1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 462
            +AATGFCTRTLKGDSEWVRRVALSDDG                                 ESVAFAPESAERTLATAVG               RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK
Sbjct:  164 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVAFAPESAERTLATAVG---------------RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 192 bits (489), Expect = 1.520e-53
Identity = 91/216 (42.13%), Postives = 133/216 (61.57%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAER-----------------TLATAVGSAGXXXXXXXXAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            + +TG+C  T+  G ++WVR + +SDDG  LASCGND S+  W +   + L  LREH HVVESV FA   A+                  +  TA+  +G        A  R+  F+ SGSRD+TV+LW A     LM+FS HENWVRCV  HP G + +S ++DR++R  D++TGRC R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC
Sbjct:  231 EISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 192 bits (488), Expect = 3.180e-53
Identity = 95/229 (41.48%), Postives = 137/229 (59.83%), Query Frame = 1
Query:    1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL--------------ATAVGSAGXXXXXXXXA-----------------VRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            + +TG+C  TL G  S+WVR VA+SDDG  LA+CGND S+ +W +   + L  +REH HVVESV FA   A+                   A+G+          A                 VRR +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G + +SA++D+++R +D++TGRC R L++AH HF+T++ +H T P+++SG +D+ ++VWEC
Sbjct:  236 EISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAVVAIGNGEAVARSPEDALTTDMVVDVTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Platelet-activating (factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 188 bits (478), Expect = 4.960e-52
Identity = 96/207 (46.38%), Postives = 128/207 (61.84%), Query Frame = 1
Query:    1 QAATGFCTRTLKG-DSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL------ATAVGSAGXXXXXXXXA---VRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR 591
            + +TGFC R+L G  ++WVR +A S DG +LAS G+D  V VW++ +   +  LREH+HVVE+VAF P      +      +T +GS          +       ++ SGSRDKT+ LWNA  G CL+  + HENWVR V  HPSG F+LS SDDRS+R FD+   RC R L DAH  FV+ALA H T P + +G V+RE+ +WECR
Sbjct:  231 EVSTGFCQRSLVGAHTDWVRCIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQSQGSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 188 bits (477), Expect = 1.110e-51
Identity = 94/228 (41.23%), Postives = 132/228 (57.89%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL-------------------------------ATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            + +TG+C  TL  G ++WVR VA+S DG  LASCGND S+  W +   + L  +REH HVVESV FA    E+ +                               +TA   +G          R + + SGSRD+TV+LW A  G  L+ F+ HENWVR V  HPSG + LSA +D+++R FD+++GRC R L++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct:  230 ELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVTDSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.550e-47
Identity = 87/223 (39.01%), Postives = 131/223 (58.74%), Query Frame = 1
Query:    7 ATGFCTRTL-KGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAE-----RTLATAVGSAGXXXXXXXXAV-----------------------RRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            +TG+CT+TL  G ++W+R +AL+DD ++LAS           + + + +  +REH HV+E + F+  + E     + ++  V  AG         +                       + R++ SGSRD+TV+LW A  G  LM F+ HENWVR V  HPSG +V+SA++D+SVR FD++TGRC R L DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct:  230 STGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANSPAAMMILANSENRDTAENGVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452          
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM)

HSP 1 Score: 174 bits (442), Expect = 1.460e-46
Identity = 98/231 (42.42%), Postives = 125/231 (54.11%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFA-------------------------------PESA--ERTLATAVGSAGXXXXXXXXAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
            + +TG+C  TL  G S+WVR VA+SDDG  LASCGND S+  W +   + L  +REH HVVESV FA                               PES   + T +TA    G         VRR +F+ SGSRD+TV+LW A  G  LM F+ HENWVR V  HPSG + LSA +D+++R FD++TGRC R L+DAH HFVT L +               ++VWEC
Sbjct:  230 ELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGIQEQVIERAHAKKLATTGALTPSNGSSLPESNNHDMTSSTAGEPTGAVAATTVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMLFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIETGRCVRTLDDAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 460          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lissencephaly-14.380e-9267.63homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Lissencephaly-12.170e-5644.59homolog n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.180e-5544.23protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Ge1_WD402.360e-5568.18domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Lissencephaly-11.520e-5342.13homolog n=2 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Lissencephaly-13.180e-5341.48homolog n=1 Tax=Globisporangium ultimum (strain AT... [more]
Platelet-activating4.960e-5246.38factor acetylhydrolase ib subunit alpha n=2 Tax=Mo... [more]
Lissencephaly-11.110e-5141.23homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Lissencephaly-14.550e-4739.01homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382... [more]
Lissencephaly-11.460e-4642.42homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9728contigEcto-sp9_F_contig9728:677..4946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue8.9e-63
Seed eggNOG ortholog2880.D7G1C0
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size1152
Cds size510
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5203483-UTR-Ecto-sp9_F_contig9728:676..12341622931063.5203483-UTR-Ecto-sp9_F_contig9728:676..1234Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9728 677..1234 -
1692279015.4458444-UTR-Ecto-sp9_F_contig9728:676..12341692279015.4458444-UTR-Ecto-sp9_F_contig9728:676..1234Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9728 677..1234 -
1622931063.5961561-UTR-Ecto-sp9_F_contig9728:4862..49461622931063.5961561-UTR-Ecto-sp9_F_contig9728:4862..4946Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9728 4863..4946 -
1692279015.5189526-UTR-Ecto-sp9_F_contig9728:4862..49461692279015.5189526-UTR-Ecto-sp9_F_contig9728:4862..4946Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9728 4863..4946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5323365-CDS-Ecto-sp9_F_contig9728:1234..13661622931063.5323365-CDS-Ecto-sp9_F_contig9728:1234..1366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 1235..1366 -
1692279015.4595468-CDS-Ecto-sp9_F_contig9728:1234..13661692279015.4595468-CDS-Ecto-sp9_F_contig9728:1234..1366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 1235..1366 -
1622931063.5437937-CDS-Ecto-sp9_F_contig9728:2940..30421622931063.5437937-CDS-Ecto-sp9_F_contig9728:2940..3042Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 2941..3042 -
1692279015.4696105-CDS-Ecto-sp9_F_contig9728:2940..30421692279015.4696105-CDS-Ecto-sp9_F_contig9728:2940..3042Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 2941..3042 -
1622931063.5555098-CDS-Ecto-sp9_F_contig9728:4066..41761622931063.5555098-CDS-Ecto-sp9_F_contig9728:4066..4176Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4067..4176 -
1692279015.4875932-CDS-Ecto-sp9_F_contig9728:4066..41761692279015.4875932-CDS-Ecto-sp9_F_contig9728:4066..4176Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4067..4176 -
1622931063.568209-CDS-Ecto-sp9_F_contig9728:4260..43901622931063.568209-CDS-Ecto-sp9_F_contig9728:4260..4390Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4261..4390 -
1692279015.5017817-CDS-Ecto-sp9_F_contig9728:4260..43901692279015.5017817-CDS-Ecto-sp9_F_contig9728:4260..4390Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4261..4390 -
1622931063.580406-CDS-Ecto-sp9_F_contig9728:4826..48621622931063.580406-CDS-Ecto-sp9_F_contig9728:4826..4862Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4827..4862 -
1692279015.5104692-CDS-Ecto-sp9_F_contig9728:4826..48621692279015.5104692-CDS-Ecto-sp9_F_contig9728:4826..4862Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9728 4827..4862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9728.17831.1prot_Ecto-sp9_F_contig9728.17831.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9728 1235..4862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9728.17831.1

>prot_Ecto-sp9_F_contig9728.17831.1 ID=prot_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAV
GSAGGGGGGGAGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVR
CVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKT
SPIVVSGGVDRELHVWECR*
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mRNA from alignment at Ecto-sp9_F_contig9728:677..4946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9728.17831.1 ID=mRNA_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4270bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9728:677..4946- (Ectocarpus species9 EcSCA_722f female)
CAGGCGGCAACGGGGTTCTGCACCCGTACGCTTAAGGGCGATTCGGAGTG GGTTCGGAGAGTAGCGTTGAGTGACGACGGCGAGATGCTTGCCAGCTGTG GGAACGACCATTCCGTCAAGGTCAGACTTCAATTTTTTCCGTGTCGCGAC TTGGTATTTTCTTACTTCTGGGCGTATGCGGCGCTAGCCAGGTACCAGTT ACATCGTGAAGCACTGACAAGACAAGATTTTCATCCGCATTTCATCTTTT GTTTGCGCGGGGTTGGTATATTAGATACCCTTCAACGTGTACCGATACAT TGTTATGACGCTGGGAACGCGACGAGCTTGGGTTCATTCGGCAATTTCGG ACCAGATTCCGTGACTTGTTCATGCGCGTGGGCACAAATCAAGTACACAC CGTGCTACTCTCTCATTCTCCCTCCGCCACCGTAAAGCCTCTCCCTGTAC CGATGAACCCACAAGAGATTCTTCGATGTACTTGTACAAGACAGAAGCAC ATGACCCTTACCCATACAATTCCTCTGCCTATCCCCCCTCCGTTCCTCCC GCTAAGGTATGGAGTGTGCACAGTGGGCAGTGCTTGCATGACTTGCGAGA ACACACACACGTGGTGGAGAGCGTAGCCTTCGCCCCGGAGAGCGCCGAGC GAACCTTGGCGACGGCGGTGGGGTCGGCAGGGGGGGGTGCGCAAGCGGGG GGTGCGGCCAATAAGCCCCGCGCGAACGGTGCGGGGGCGGGGGGGGGGGT TACGGCGTGGGGGGAGGAAGGGGGTGGTGGGGGGGCAGGGGCTGTGCGGA GGCGGTTCGTGGCGTCCGGGTCGAGAGACAAGACCGTCAAGTTGTGGAAC GCTTCCGTGGGGCATTGTCTCATGACTTTCGTGAGTGCCATTTTTCCCTC TCGCTACAACCTCACCCCCATCGTTGCCACGGGCGATGCCCTCTCGTGCG ATGCCCTCTCGTGCGATGCCCTCTTGCTCTGCCTTGCCTGCCCATCCAGG ATTGGACTTGCTTCGCGCATTGTGCGGTTATCGTTATGCGGGGCTAGAGC ATGTTGTTGTCGGTGTGCCGGGGGCACGAGCCACTTTTGCGGGTACTTTG GAGATGCTGATCGCTTTCCGTCAAAGAAGGCCGTGCCCTGTGTTGTCAAA CGTCAGCTGCTGCTATTGTCCACTTTCCCAGCTCTATCTTTGCGGTATCG CCCTCCTTCGTGATGATGGTGCTCTACCTCTTACTGCCAAGAGACCGGCG TAGTTTTGTTCCCGTGCTTTGCCTCTTTCTCGTTCGTCGTGCACTCTCCC CCCCCCCCCCCATTGTCGTCTTTTGGAATGGCGTTCTTTTCGCGCGGCGC ACTTGTACTTGTACCATACCACCCTCATGTGCCGTTTTCTAGAAGTGGGC CTTTGAGAGAGCTTTGCTGGAGCCTCGGGTGGCCTTTCGGAGCCCAGCTT CCCGTGTAACGTTTTGTTCTACAAAACCCACGCGCTGTGTACCCACCTCC GCGTGTGACACTCTCGCATGGCTGCTGTTATGAGACGTTGTGCCTGATGG CTGTTGGTGACCGCCTCCACCCCGGCTTCCCGCGCGTTGCCGGGCGAAAC AGCCCTGCTGTGTTTCATCTCACAACCTCTCGCGCGGTGCTGTAGGGACT GCGGGTGGCGCGTGCGTGATTCGTCTCTGTCTCCCCTGACCTTCTTGACG ATTGATTTCTCGTCTGTGTTGGCCCCGCTGGCCTCGACCGTGTCTCGACC CGTTTCGTAAACCGTCCGTGAAACCACAAGCCTTGACATTTACTCCCCTT TTTCATGCTCTTCTTCTTCCCTGCTTTATTGCGCTCTCCTGGCTTGTTTC CGTATTCTCTGCGCCGTCGACCGGGATGGAATGGACCGTAAATGAAAAAT TTAGAGCGTTCACGAGAACTGGGTGAGGTGCGTGTTGGTGCACCCCAGCG GAGCGTTTGTCCTCAGCGCCTCCGACGACAGATCTGTAAGGGCATTCGAC GTGAAGGTGAAGAGAGCTTTGTTTTATTCTTTTATTTTGTCTGTATGACC CAACGAATTCATCTCTATCGAAGAAAAGGGTCTGAGATAGATTAGCAATG AATCCATAGCGTCAGCGAGTTCTGTTTTTCCACGATTTCCCGAACAGCAC ACAGTGAGATCTCCCCCTTTTTTCCTTCTTTTTTTTCTTCGAACGTGTTG TACGTGACTCGTGCCTCCCCAGTTACGGTAAGGGTATTGTCACCAGAGTG TTTGTGGCATGGCATCGAAAATCGAATTCGGACGTCGAATGACACTGATT GGACAACTTGCCGGGCCTGCCGCCACCGGGTTTTCGACACGCGTTTTTTG TGTTCGGATATTCTATCGATGTGATTAGTTCAAAAGCGAAGACTTATTAG TATTCCGTCAACGGGAAGATCAAGCTGTTCGCCGGTTGCATGGCAGACCC CGTTATAGCCGCTTGTCTCTTCATTTCGTTACTCGTCTAGCCACTGCAGC CCGCTCTACCATGTAAGCGATGCGTTGGCGTGCAGCTGGCATCCATCAGA GCACAACAGTGCACTTTCGTTGAGCGGGAGCTCGTCTAAATTGAGATAGA TAATGACAGAGAGAGGAGCCATGGACGTGAACTTGTTCCTCTAGTCAACG GCAGCGTTTGGCATTCCAACATCAGACCGGAGATGTTTCAATCACACGCT TTCGCTGAGTTTCGCGACGTATCAATGCGGGACCAAGACCTTCCAACCCG CTTTGATCATGACCGACGTCCGGAACTATCGTTCGCGCCTGGGATGCCCT GTGGCTCTCATGGGTCATGGTTTGGATCATCGAAGGACATGTTTGGCCCA TTCTTGGCGCCTTTTTCGTGTCTACAGGTGGTTGCTTTCGATTTCGATTT TCAATGCAATCCCACGCGCACAAAAATCGGAGCCAACTGAAACCTAGAAT TGAAATGAAACATGTCGTTCTGACGTTCCGGTGACAAGACCTGACACCCT TAGCATCGACCGCGTTTATTTGGCTGACTAATGAAAAAACGACTCTAAAC CTCGGCCAGGGCGAAAGCCCAATTTGCTTCTTGTCGGTGGGGTCCCCGGA CATGGGAGGCTAGGGGAAGGGGGGCCCGTGTGTGCGTGCGAGCTTTTTGT GTGTGTCCCCAATCGCTCTTGTGTTGTTCTTCTTGACCTATTCAAGGGGC GACGAAAGCGGTACTGTAGGGGTGGGCAAGCACTTGGTGGACCTCTTGGC TTGGAGCTGTGCGAACTTGGTCGACATTAAGCCGACCCCCCCCCCCCCCC CATCCCACCACCACACGGCAAGCCGACACCGGCCACCACCAGAACACCCA CCCCGCACGACCCACNNNNNNNNNNGGTACGGTAGGGGGGGGGAAGCCCT TGGGGGCCCCTTTGGCTGGGGGCGGGGCGGACTTGGGCGGCAGTACGCCG GCCCCCCCCCCCCCCCGACTTTTTAAGCGCCAGGCGTGTGTTCGAAAGAC CACGGTATGAATGATCCTGCTCGACACACCACCTTAGGTTTTGTTCCCTT CCCCCCCGCTCCGCTCCTGCCTCCGAACAGACGGGGAGGTGCGCGCGAAA GTTGGAGGACGCGCACGGGCACTTCGTAACAGCACTGGCGATGCACAAGA CGTCCCCTATCGTGGTATCCGGGGGCGTAGATCGGGAGTTACACGTTTGG GAATGTCGCTGACGATGGGGACATGGGGGAGAGATGGGGCAAGGCTGGAA CACTATTTACATTGGTTTTGGGTCGTATTTTTCGGCGTTATTTTTGTGCA ACATGTCTAGAATCCAGTGACCAGAATGCTTTTCGTATGTAGTGATGTAT GTCTACCATGATCTTGTGATTTTTTTTTTTAGTGTAATTCTGGTGGGCTT TGAACAAGGAACGACAACGGTGCGCTCTCGCATACTTAGTCTACCCTGCC TTCTCCCTTCCCTCGCGACCCCAGCTCCCCTTGTCACGAATGGTCGCTTC AAAAATAGTGAGCCGAGTCAGCTGCTGTGAGTGACGGCAGTTGGTGGGTG GTGTGACTTTGTTATTTTGGCGATTAATTTTATGAAGGTAGACGGTGTAC GCACTAAATAACACAAGTGCTGTATGAAACAACAGGCAGCGCACTCGTGC AGCATTTGAAGAGTTTGCGATCTGGACATTTGGAGTCGTCGGTCCGTGAG AGTTTTTTTTTGCACGGAGTGGAGCGGGGCCCTGCCTTTTTGGGGGCCTT CGAGCTTGAAGCGACCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9728:677..4946-

>mRNA_Ecto-sp9_F_contig9728.17831.1 ID=mRNA_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9728:677..4946- (Ectocarpus species9 EcSCA_722f female)
ATGCTTGCCAGCTGTGGGAACGACCATTCCGTCAAGATGCTTGCCAGCTG
TGGGAACGACCATTCCGTCAAGGTATGGAGTGTGCACAGTGGGCAGTGCT
TGCATGACTTGCGAGAACACACACACGTGGTGGAGAGCGTAGCCTTCGCC
CCGGAGAGCGCCGAGCGAACCTTGGCGACGGCGGTGGGGTCGGCAGGGGG
GGGTATGGAGTGTGCACAGTGGGCAGTGCTTGCATGACTTGCGAGAACAC
ACACACGTGGTGGAGAGCGTAGCCTTCGCCCCGGAGAGCGCCGAGCGAAC
CTTGGCGACGGCGGTGGGGTCGGCAGGGGGGGGGGGTGGTGGGGGGGCAG
GGGCTGTGCGGAGGCGGTTCGTGGCGTCCGGGTCGAGAGACAAGACCGTC
AAGTTGTGGAACGCTTCCGTGGGGCATTGTCTCATGACTTTCGGGGTGGT
GGGGGGGCAGGGGCTGTGCGGAGGCGGTTCGTGGCGTCCGGGTCGAGAGA
CAAGACCGTCAAGTTGTGGAACGCTTCCGTGGGGCATTGTCTCATGACTT
TCAGCGTTCACGAGAACTGGGTGAGGTGCGTGTTGGTGCACCCCAGCGGA
GCGTTTGTCCTCAGCGCCTCCGACGACAGATCTGTAAGGGCATTCGACGT
GAAGAGCGTTCACGAGAACTGGGTGAGGTGCGTGTTGGTGCACCCCAGCG
GAGCGTTTGTCCTCAGCGCCTCCGACGACAGATCTGTAAGGGCATTCGAC
GTGAAGACGGGGAGGTGCGCGCGAAAGTTGGAGGACGCGCACGGGCACTT
CGTAACAGCACTGGCGATGCACAAGACGTCCCCTATCGTGGTATCCGGGG
GCGTAGATCGGGAGTTACACGTTTGGGAATGTCGCTGAACGGGGAGGTGC
GCGCGAAAGTTGGAGGACGCGCACGGGCACTTCGTAACAGCACTGGCGAT
GCACAAGACGTCCCCTATCGTGGTATCCGGGGGCGTAGATCGGGAGTTAC
ACGTTTGGGAATGTCGCTGA
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