mRNA_Ecto-sp9_F_contig9728.17831.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI) HSP 1 Score: 293 bits (750), Expect = 4.380e-92 Identity = 163/241 (67.63%), Postives = 169/241 (70.12%), Query Frame = 1
Query: 1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*RWGHGGEMGQG-----WNTI--YIG-FGSYFSALFLCNMSRIQ 699
+AATGFCTRTLKGDSEWVRRVALSDDG VVES+AFAPESAER LATAVGS G AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE G G G G W + Y+ F F + +MSRIQ
Sbjct: 230 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAVGSEGGGGGEG--AVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWELSLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVIFVHMSRIQ 468
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.170e-56 Identity = 99/222 (44.59%), Postives = 136/222 (61.26%), Query Frame = 1
Query: 1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESA-----ERTLATAVGSAGXXXXXXXXAV--------------------RRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+ ATG+C TL G S+WVR VA+SDDG LASCGND S+ W + + L +REH HVVESVAFA A ER A + + G A R +F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G +V+S ++DR++R +D++TGRC R L++AH HF+T+ +H + P++V+GG+D+ ++VWEC
Sbjct: 234 ELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL) HSP 1 Score: 197 bits (502), Expect = 1.180e-55 Identity = 92/208 (44.23%), Postives = 134/208 (64.42%), Query Frame = 1
Query: 7 ATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERT---------LATAVGS----AGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+TG+C T+ G ++WVR + +SDDG LASCGND ++ W + + L LREH HVVESV FA + LA+ VG+ A + +F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G +V+S ++D+++R FD++TGRC R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC
Sbjct: 219 STGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPLDAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Ge1_WD40 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE) HSP 1 Score: 193 bits (491), Expect = 2.360e-55 Identity = 105/154 (68.18%), Postives = 106/154 (68.83%), Query Frame = 1
Query: 1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 462
+AATGFCTRTLKGDSEWVRRVALSDDG ESVAFAPESAERTLATAVG RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK
Sbjct: 164 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVAFAPESAERTLATAVG---------------RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN) HSP 1 Score: 192 bits (489), Expect = 1.520e-53 Identity = 91/216 (42.13%), Postives = 133/216 (61.57%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAER-----------------TLATAVGSAGXXXXXXXXAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+ +TG+C T+ G ++WVR + +SDDG LASCGND S+ W + + L LREH HVVESV FA A+ + TA+ +G A R+ F+ SGSRD+TV+LW A LM+FS HENWVRCV HP G + +S ++DR++R D++TGRC R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC
Sbjct: 231 EISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD) HSP 1 Score: 192 bits (488), Expect = 3.180e-53 Identity = 95/229 (41.48%), Postives = 137/229 (59.83%), Query Frame = 1
Query: 1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL--------------ATAVGSAGXXXXXXXXA-----------------VRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+ +TG+C TL G S+WVR VA+SDDG LA+CGND S+ +W + + L +REH HVVESV FA A+ A+G+ A VRR +F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G + +SA++D+++R +D++TGRC R L++AH HF+T++ +H T P+++SG +D+ ++VWEC
Sbjct: 236 EISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAVVAIGNGEAVARSPEDALTTDMVVDVTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Platelet-activating (factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA) HSP 1 Score: 188 bits (478), Expect = 4.960e-52 Identity = 96/207 (46.38%), Postives = 128/207 (61.84%), Query Frame = 1
Query: 1 QAATGFCTRTLKG-DSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL------ATAVGSAGXXXXXXXXA---VRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR 591
+ +TGFC R+L G ++WVR +A S DG +LAS G+D V VW++ + + LREH+HVVE+VAF P + +T +GS + ++ SGSRDKT+ LWNA G CL+ + HENWVR V HPSG F+LS SDDRS+R FD+ RC R L DAH FV+ALA H T P + +G V+RE+ +WECR
Sbjct: 231 EVSTGFCQRSLVGAHTDWVRCIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQSQGSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC) HSP 1 Score: 188 bits (477), Expect = 1.110e-51 Identity = 94/228 (41.23%), Postives = 132/228 (57.89%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTL-------------------------------ATAVGSAGXXXXXXXXAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+ +TG+C TL G ++WVR VA+S DG LASCGND S+ W + + L +REH HVVESV FA E+ + +TA +G R + + SGSRD+TV+LW A G L+ F+ HENWVR V HPSG + LSA +D+++R FD+++GRC R L++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct: 230 ELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVTDSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA) HSP 1 Score: 176 bits (445), Expect = 4.550e-47 Identity = 87/223 (39.01%), Postives = 131/223 (58.74%), Query Frame = 1
Query: 7 ATGFCTRTL-KGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAE-----RTLATAVGSAGXXXXXXXXAV-----------------------RRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+TG+CT+TL G ++W+R +AL+DD ++LAS + + + + +REH HV+E + F+ + E + ++ V AG + + R++ SGSRD+TV+LW A G LM F+ HENWVR V HPSG +V+SA++D+SVR FD++TGRC R L DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct: 230 STGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANSPAAMMILANSENRDTAENGVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Match: Lissencephaly-1 (homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM) HSP 1 Score: 174 bits (442), Expect = 1.460e-46 Identity = 98/231 (42.42%), Postives = 125/231 (54.11%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFA-------------------------------PESA--ERTLATAVGSAGXXXXXXXXAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 588
+ +TG+C TL G S+WVR VA+SDDG LASCGND S+ W + + L +REH HVVESV FA PES + T +TA G VRR +F+ SGSRD+TV+LW A G LM F+ HENWVR V HPSG + LSA +D+++R FD++TGRC R L+DAH HFVT L + ++VWEC
Sbjct: 230 ELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGIQEQVIERAHAKKLATTGALTPSNGSSLPESNNHDMTSSTAGEPTGAVAATTVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMLFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIETGRCVRTLDDAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 460 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9728.17831.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9728.17831.1 >prot_Ecto-sp9_F_contig9728.17831.1 ID=prot_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp MLASCGNDHSVKVWSVHSGQCLHDLREHTHVVESVAFAPESAERTLATAVback to top mRNA from alignment at Ecto-sp9_F_contig9728:677..4946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9728.17831.1 ID=mRNA_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4270bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9728:677..4946- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9728:677..4946- >mRNA_Ecto-sp9_F_contig9728.17831.1 ID=mRNA_Ecto-sp9_F_contig9728.17831.1|Name=mRNA_Ecto-sp9_F_contig9728.17831.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9728:677..4946- (Ectocarpus species9 EcSCA_722f female)back to top |