prot_Ecto-sp9_F_contig959.17706.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig959.17706.1
Unique Nameprot_Ecto-sp9_F_contig959.17706.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length72
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig959.17706.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.740e-35
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 0 
Query:    1 MAGALGVALGSTPLVDGAPNGIEKISGAGFPRGQDEISLWTEKGLPVSRANKAEYVRLASKPARGKFKGGG 71
            M GALG+ALGSTPL+ GAPNGIEKISGAGF RGQDE SLWT++GLPVSRANKAEYVRLAS+PARGKFKGGG
Sbjct:    1 MVGALGLALGSTPLIAGAPNGIEKISGAGFQRGQDEFSLWTKEGLPVSRANKAEYVRLASRPARGKFKGGG 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig959.17706.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.740e-3587.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig959contigEcto-sp9_F_contig959:23754..25052 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig959.17706.1mRNA_Ecto-sp9_F_contig959.17706.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig959 23754..25052 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig959.17706.1 ID=prot_Ecto-sp9_F_contig959.17706.1|Name=mRNA_Ecto-sp9_F_contig959.17706.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=72bp
MAGALGVALGSTPLVDGAPNGIEKISGAGFPRGQDEISLWTEKGLPVSRA
NKAEYVRLASKPARGKFKGGG*
back to top