mRNA_Ecto-sp9_F_contig959.17706.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig959.17706.1
Unique NamemRNA_Ecto-sp9_F_contig959.17706.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig959.17706.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.740e-35
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:    1 MAGALGVALGSTPLVDGAPNGIEKISGAGFPRGQDEISLWTEKGLPVSRANKAEYVRLASKPARGKFKGGG 213
            M GALG+ALGSTPL+ GAPNGIEKISGAGF RGQDE SLWT++GLPVSRANKAEYVRLAS+PARGKFKGGG
Sbjct:    1 MVGALGLALGSTPLIAGAPNGIEKISGAGFQRGQDEFSLWTKEGLPVSRANKAEYVRLASRPARGKFKGGG 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig959.17706.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.740e-3587.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig959contigEcto-sp9_F_contig959:23754..25052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.1519778-CDS-Ecto-sp9_F_contig959:23753..238731622931045.1519778-CDS-Ecto-sp9_F_contig959:23753..23873Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 23754..23873 +
1692279006.8404844-CDS-Ecto-sp9_F_contig959:23753..238731692279006.8404844-CDS-Ecto-sp9_F_contig959:23753..23873Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 23754..23873 +
1622931045.1692324-CDS-Ecto-sp9_F_contig959:24956..250521622931045.1692324-CDS-Ecto-sp9_F_contig959:24956..25052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 24957..25052 +
1692279006.8537362-CDS-Ecto-sp9_F_contig959:24956..250521692279006.8537362-CDS-Ecto-sp9_F_contig959:24956..25052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 24957..25052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig959.17706.1prot_Ecto-sp9_F_contig959.17706.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig959 23754..25052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig959.17706.1

>prot_Ecto-sp9_F_contig959.17706.1 ID=prot_Ecto-sp9_F_contig959.17706.1|Name=mRNA_Ecto-sp9_F_contig959.17706.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=72bp
MAGALGVALGSTPLVDGAPNGIEKISGAGFPRGQDEISLWTEKGLPVSRA
NKAEYVRLASKPARGKFKGGG*
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mRNA from alignment at Ecto-sp9_F_contig959:23754..25052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig959.17706.1 ID=mRNA_Ecto-sp9_F_contig959.17706.1|Name=mRNA_Ecto-sp9_F_contig959.17706.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1299bp|location=Sequence derived from alignment at Ecto-sp9_F_contig959:23754..25052+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTGGCGCTCTCGGAGTAGCCCTCGGATCGACGCCACTCGTAGATGG
CGCCCCCAACGGGATCGAGAAAATATCGGGGGCTGGATTCCCACGAGGTC
AAGATGAAATCTCCCTTTGGGTAAGAAAGCCCTCCATCGGTCGATGAATG
GCAAGTCGGTGCACATTCCAGCGAGTAGGTTCGAAACATGGGCGATCGTT
TCGTGTGTTCCAGGCTGGGAATATTACTGGGCCGAAGGCGGTGGTATTTG
TCCGAAGGGGTTGGTGGCGATACTCGTGTACACTGTATTGCAAGGCCCGT
TGCATCTGGCTTATTCCAGCTCCTGAGACAGACGTGCCCCGTCGCAGCGG
TCCGATTGTGCGGATGCATTTATTGTTTCCGTCTTGGTTCAGTTTGGCAC
ACGAACTGGATGCCCCTCATCGGGCCTCTGTTGTTGAGGCTGCTCAGTTG
AATCCTTCCAAGCCCTGATCCCTTCTTAGTAGACAGAGCGTACCAGAGAG
GCCGTGGTAACACATATCATTCCGATGGCAAAGACTTGATGAAGCACAGA
TTGGCGCACAGTGTAGGTCTGGGCGCGACTGGTTGACGAATGATGCCAAT
CCTTCCGAAACGCGAAAAATATCGTCAAACGATCGAAGCAAGCAGGCGTC
TCGTGAATCCGTCAAGAAATTCGGTGAGTATTGAGTCTGACCTCACTCCG
TCCTTCACACCCGACTACACCGAACCATAGTAGTCCGAAGATGTACCATG
TTTCAATGTCACGCGAGCCCGGAATGATGGAAGACCCAAGAAATTCAAGT
GGCAGATTCGCCTTGTCCCGTGTGTGTGCAATTCCGCGCGTTCGTGGAAA
ACACGTGACGGGCGCAACACGCGCATCCGGTGCGCTATGTCACCGTACGG
CAAAGTCATGGCAATGCCGAGCACCGTGGTACGCATGCACGCTAAGTTTA
TTTGCGAATAGATATGTCTGGGGTCCAGCAAAGTTCCATCGACATGCCAG
GCATCTGGCGAAATGTCTTGGTGGCAATGTCGCTTTATGCGTGCGAAAGA
GACCTGGTGGGGATCGGTTGGTTCCGCATCACAGAAACGACGCAATCAGG
AATAGCACAAAGTCTGAATGCATCGCGTCATGAATGAAACCCCCACCTAC
CCAACCAACCCACCGCCTCATTGACGTCTCTTCCATTTCACGCCATGCGA
CAGACGGAGAAGGGCTTGCCGGTCTCGCGTGCAAACAAGGCTGAATACGT
GCGCCTCGCCTCAAAGCCGGCACGCGGCAAGTTCAAGGGGGGTGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig959:23754..25052+

>mRNA_Ecto-sp9_F_contig959.17706.1 ID=mRNA_Ecto-sp9_F_contig959.17706.1|Name=mRNA_Ecto-sp9_F_contig959.17706.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp9_F_contig959:23754..25052+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTGGCGCTCTCGGAGTAGCCCTCGGATCGACGCCACTCGTAGATGG
CGCCCCCAACGGGATCGAGAAAATATCGGGGGCTGGATTCCCACGAGGTC
AAGATGAAATCTCCCTTTGGATGGCTGGCGCTCTCGGAGTAGCCCTCGGA
TCGACGCCACTCGTAGATGGCGCCCCCAACGGGATCGAGAAAATATCGGG
GGCTGGATTCCCACGAGGTCAAGATGAAATCTCCCTTTGGACGGAGAAGG
GCTTGCCGGTCTCGCGTGCAAACAAGGCTGAATACGTGCGCCTCGCCTCA
AAGCCGGCACGCGGCAAGTTCAAGGGGGGTGGTTAGACGGAGAAGGGCTT
GCCGGTCTCGCGTGCAAACAAGGCTGAATACGTGCGCCTCGCCTCAAAGC
CGGCACGCGGCAAGTTCAAGGGGGGTGGTTAG
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