prot_Ecto-sp9_F_contig9443.17596.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9443.17596.1
Unique Nameprot_Ecto-sp9_F_contig9443.17596.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length195
Homology
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Novel (Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.560e-84
Identity = 170/195 (87.18%), Postives = 172/195 (88.21%), Query Frame = 0
Query:    1 RSVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPPXXXXXXXXXXXXXXXXXXXTRVAPDVAAXXXXXXXXXXXXXXVRAAAENGDVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRTRXXXXXXXXXXXXFDFEAGLAKFDKEK 195
            ++VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP      XXXXXXXXXXX  TRVAPDVAA              VRAAAENGDVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRT XXXXXXXXXXXXFDFEAGLAKFDKEK
Sbjct:   37 QNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPPPAAPVQXXXXXXXXXXXVATRVAPDVAAGGGAGG--------VRAAAENGDVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRTXXXXXXXXXXXXXFDFEAGLAKFDKEK 223          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.880e-77
Identity = 168/195 (86.15%), Postives = 171/195 (87.69%), Query Frame = 0
Query:    1 RSVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPPXXXXXXXXXXXXXXXXXXXTRVAPDVAAXXXXXXXXXXXXXXVRAAAENGDVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRTRXXXXXXXXXXXXFDFEAGLAKFDKEK 195
            ++VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAP PP   XXXXXXXXXXXXXXXXTRVAPDVAA              VRAAAENGDVEAED+PGS TMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXX LPGQGNHLLNRRT XXXXXXXXXXXX   EAGLAKFDKEK
Sbjct:   37 QNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPTPPPAAXXXXXXXXXXXXXXXXTRVAPDVAAGGGGAGG-------VRAAAENGDVEAEDSPGSPTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXXLPGQGNHLLNRRTXXXXXXXXXXXXXXXXEAGLAKFDKEK 224          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Scd6-like (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-10
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 RSVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHET-AEAPAP 49
            + VKSWGTE R+EG Q +P SD +  C+ FRG+DIKDLHVH+T AEAP P
Sbjct:   38 QDVKSWGTENRVEGPQ-VPASDEIFGCIVFRGQDIKDLHVHDTPAEAPKP 86          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178DLF2_9PLEO)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP 50
            +V+S+GTEGR  G  + PPSD ++  + FRG D+KDL + ETA+  APP
Sbjct:   37 NVRSFGTEGRKGGKDEYPPSDVVYEQIVFRGSDVKDLRIEETAKEKAPP 85          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) TaxID=321614 RepID=Q0V4D7_PHANO)

HSP 1 Score: 57.4 bits (137), Expect = 2.770e-6
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP 50
            +V+S+GTEGR  G+ + PPSD ++  + FRG D+KDL + E+A+  APP
Sbjct:   25 NVRSFGTEGRKGGNDEYPPSDVVYEQIVFRGSDVKDLRIEESAKEKAPP 73          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A6ZBU3_9PLEO)

HSP 1 Score: 57.4 bits (137), Expect = 2.770e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP 50
            +V+S+GTEGR  G  + PPSD ++  + FRG D+KDL + E+A+  APP
Sbjct:   37 NVRSFGTEGRKNGKDEYPPSDVVYEQIVFRGSDVKDLRIEESAKEKAPP 85          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Scd6-like (Sm domain-containing protein n=1 Tax=Ampelomyces quisqualis TaxID=50730 RepID=A0A6A5QQY1_AMPQU)

HSP 1 Score: 57.4 bits (137), Expect = 2.770e-6
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP 50
            +V+S+GTEGR  G+ + PPSD ++  + FRG D+KDL + E+A+  APP
Sbjct:   37 NVRSFGTEGRKGGNDEYPPSDVVYEQIVFRGSDVKDLRIEESAKEKAPP 85          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=765868 RepID=A0A178AW65_9PLEO)

HSP 1 Score: 57.4 bits (137), Expect = 3.250e-6
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP 50
            +V+S+GTEGR  G+ + PPSD ++  + FRG D+KDL + E+A+  APP
Sbjct: 1083 NVRSFGTEGRKGGNDEYPPSDVVYEQIVFRGSDVKDLRIEESAKEKAPP 1131          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2EIQ7_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 3.850e-6
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    2 SVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEA--PAPP 50
            +V S+GTEGR  GD +IP SD+++  + FRG D+KDL + E A    PAPP
Sbjct:   37 NVTSFGTEGRRNGDDEIPASDNIYEYIVFRGSDVKDLRIEEPARESKPAPP 87          
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 8.220e-6
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 RSVKSWGTEGRLEGDQQIP---PSDHLHACVNFRGEDIKDLHVHET-AEA--PAPP 50
            ++V+S+GTEGR   +Q +    PSD +H  + FRG+DIKDLHVHE  AEA  PAPP
Sbjct:   38 QNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPP 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9443.17596.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
Novel1.560e-8487.18Sm-like protein with long N-and C-terminal domains... [more]
Uncharacterized2.880e-7786.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Scd6-like1.440e-1064.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
Uncharacterized1.530e-651.02protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=76... [more]
Uncharacterized2.770e-648.98protein n=2 Tax=Phaeosphaeria nodorum (strain SN15... [more]
Uncharacterized2.770e-648.98protein n=1 Tax=Ophiobolus disseminans TaxID=14699... [more]
Scd6-like2.770e-648.98Sm domain-containing protein n=1 Tax=Ampelomyces q... [more]
Uncharacterized3.250e-648.98protein n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=7... [more]
Uncharacterized3.850e-650.98protein n=1 Tax=Lepidopterella palustris CBS 459.8... [more]
Predicted8.220e-655.36protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 1..68
e-value: 0.0015
score: 21.2
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 2..42
e-value: 5.3E-10
score: 39.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..48
e-value: 1.4E-10
score: 42.8
NoneNo IPR availablePANTHERPTHR13586:SF0TRAILER HITCH, ISOFORM Hcoord: 2..195
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 2..195
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 170..195
score: 9.571
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9443contigEcto-sp9_F_contig9443:107..3318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9443.17596.1mRNA_Ecto-sp9_F_contig9443.17596.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9443 107..3318 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9443.17596.1 ID=prot_Ecto-sp9_F_contig9443.17596.1|Name=mRNA_Ecto-sp9_F_contig9443.17596.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=195bp
RSVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETAEAPAPP
PAAPVQPPPPPAPPVAPVATRVAPDVAAGGGGSGGGGGGAGGVRAAAENG
DVEAEDAPGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGPGSGAG
SGTGALPGQGNHLLNRRTRGGGGGPSEAEGEFDFEAGLAKFDKEK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR025762DFDF
IPR010920LSM_dom_sf