prot_Ecto-sp9_F_contig944.17587.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig944.17587.1
Unique Nameprot_Ecto-sp9_F_contig944.17587.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length222
Homology
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BLAST of mRNA_Ecto-sp9_F_contig944.17587.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.410e-32
Identity = 190/221 (85.97%), Postives = 194/221 (87.78%), Query Frame = 0 
Query:    1 MPSERNSKRLVTTAFQVMQVDPGFLNGELGYIREKLKVSRLNLGRFGLKGSLPPSLGDVLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVEGHXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXSKLERLYLDRXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGQLRGVEGEERLGQLFPNCEISVSSWTNEWG 221
            MP+ERNSKRL+ TAFQVMQVDPGFLNGELGYIREKL+VSRLNLGRFGLKGSLPPSLGDVLQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX          XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TGQLRGVE EERLGQLFPNCEISV+SWTNEWG
Sbjct:  317 MPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKGSLPPSLGDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLNLA-TGQLRGVEDEERLGQLFPNCEISVASWTNEWG 536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig944.17587.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical6.410e-3285.97leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 59..82
e-value: 31.0
score: 9.2
coord: 132..154
e-value: 64.0
score: 6.6
coord: 156..180
e-value: 30.0
score: 9.3
coord: 83..107
e-value: 24.0
score: 10.1
coord: 108..131
e-value: 46.0
score: 7.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 102..220
e-value: 2.3E-31
score: 110.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 26..101
e-value: 3.1E-15
score: 58.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 57..96
e-value: 9.7E-8
score: 31.7
coord: 107..145
e-value: 1.9E-6
score: 27.5
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 101..195
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 39..138
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 101..195
coord: 39..138
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 37..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig944contigEcto-sp9_F_contig944:5703..8781 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig944.17587.1mRNA_Ecto-sp9_F_contig944.17587.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig944 5585..9088 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig944.17587.1 ID=prot_Ecto-sp9_F_contig944.17587.1|Name=mRNA_Ecto-sp9_F_contig944.17587.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=222bp
MPSERNSKRLVTTAFQVMQVDPGFLNGELGYIREKLKVSRLNLGRFGLKG
SLPPSLGDVLQLTELDLNGNALGGVIPGSFGDLTALTTLNLGGNRLVEGH
IPPELGGLRELRELNLQDNDLTGTIPAALGNLSKLERLYLDRNKLGGALP
RELGTLRALRVLYLGGNLITGEIPQELAALTDLQQLNLGTGQLRGVEGEE
RLGQLFPNCEISVSSWTNEWG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt