mRNA_Ecto-sp9_F_contig944.17587.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig944.17587.1
Unique NamemRNA_Ecto-sp9_F_contig944.17587.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig944.17587.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.690e-56
Identity = 229/260 (88.08%), Postives = 233/260 (89.62%), Query Frame = 2 
Query:    2 TDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPSERNSKRLVTTAFQVMQVDPGFLNGELGYIREKLKVSRLNLGRFGLKGSLPPSLGDVLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVEGHXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXSKLERLYLDRXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGQLRGVEGEERLGQLFPNCEISVSSWTNEWG 781
            TDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMP+ERNSKRL+ TAFQVMQVDPGFLNGELGYIREKL+VSRLNLGRFGLKGSLPPSLGDVLQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX          XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TGQLRGVE EERLGQLFPNCEISV+SWTNEWG
Sbjct:  278 TDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKGSLPPSLGDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLNLA-TGQLRGVEDEERLGQLFPNCEISVASWTNEWG 536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig944.17587.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical4.690e-5688.08leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig944contigEcto-sp9_F_contig944:5585..9088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-18_002840.1
Exons8
Model size1091
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig944.17587.1prot_Ecto-sp9_F_contig944.17587.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig944 5703..8781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.922921-UTR-Ecto-sp9_F_contig944:5584..57021622931025.922921-UTR-Ecto-sp9_F_contig944:5584..5702Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig944 5585..5702 +
1692278998.3753488-UTR-Ecto-sp9_F_contig944:5584..57021692278998.3753488-UTR-Ecto-sp9_F_contig944:5584..5702Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig944 5585..5702 +
1622931026.1219215-UTR-Ecto-sp9_F_contig944:8781..90881622931026.1219215-UTR-Ecto-sp9_F_contig944:8781..9088Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig944 8782..9088 +
1692278998.4802244-UTR-Ecto-sp9_F_contig944:8781..90881692278998.4802244-UTR-Ecto-sp9_F_contig944:8781..9088Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig944 8782..9088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.9395936-CDS-Ecto-sp9_F_contig944:5702..58501622931025.9395936-CDS-Ecto-sp9_F_contig944:5702..5850Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 5703..5850 +
1692278998.3946457-CDS-Ecto-sp9_F_contig944:5702..58501692278998.3946457-CDS-Ecto-sp9_F_contig944:5702..5850Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 5703..5850 +
1622931025.9818063-CDS-Ecto-sp9_F_contig944:6054..61261622931025.9818063-CDS-Ecto-sp9_F_contig944:6054..6126Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6055..6126 +
1692278998.4070866-CDS-Ecto-sp9_F_contig944:6054..61261692278998.4070866-CDS-Ecto-sp9_F_contig944:6054..6126Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6055..6126 +
1622931026.0072317-CDS-Ecto-sp9_F_contig944:6591..66631622931026.0072317-CDS-Ecto-sp9_F_contig944:6591..6663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6592..6663 +
1692278998.4163582-CDS-Ecto-sp9_F_contig944:6591..66631692278998.4163582-CDS-Ecto-sp9_F_contig944:6591..6663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6592..6663 +
1622931026.0211084-CDS-Ecto-sp9_F_contig944:6832..69071622931026.0211084-CDS-Ecto-sp9_F_contig944:6832..6907Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6833..6907 +
1692278998.4261665-CDS-Ecto-sp9_F_contig944:6832..69071692278998.4261665-CDS-Ecto-sp9_F_contig944:6832..6907Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 6833..6907 +
1622931026.0361788-CDS-Ecto-sp9_F_contig944:7322..73941622931026.0361788-CDS-Ecto-sp9_F_contig944:7322..7394Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 7323..7394 +
1692278998.4362147-CDS-Ecto-sp9_F_contig944:7322..73941692278998.4362147-CDS-Ecto-sp9_F_contig944:7322..7394Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 7323..7394 +
1622931026.0506744-CDS-Ecto-sp9_F_contig944:7749..78211622931026.0506744-CDS-Ecto-sp9_F_contig944:7749..7821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 7750..7821 +
1692278998.4473388-CDS-Ecto-sp9_F_contig944:7749..78211692278998.4473388-CDS-Ecto-sp9_F_contig944:7749..7821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 7750..7821 +
1622931026.066484-CDS-Ecto-sp9_F_contig944:8146..82181622931026.066484-CDS-Ecto-sp9_F_contig944:8146..8218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 8147..8218 +
1692278998.4584937-CDS-Ecto-sp9_F_contig944:8146..82181692278998.4584937-CDS-Ecto-sp9_F_contig944:8146..8218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 8147..8218 +
1622931026.093515-CDS-Ecto-sp9_F_contig944:8698..87811622931026.093515-CDS-Ecto-sp9_F_contig944:8698..8781Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 8699..8781 +
1692278998.4696903-CDS-Ecto-sp9_F_contig944:8698..87811692278998.4696903-CDS-Ecto-sp9_F_contig944:8698..8781Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig944 8699..8781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig944.17587.1

>prot_Ecto-sp9_F_contig944.17587.1 ID=prot_Ecto-sp9_F_contig944.17587.1|Name=mRNA_Ecto-sp9_F_contig944.17587.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=222bp
MPSERNSKRLVTTAFQVMQVDPGFLNGELGYIREKLKVSRLNLGRFGLKG
SLPPSLGDVLQLTELDLNGNALGGVIPGSFGDLTALTTLNLGGNRLVEGH
IPPELGGLRELRELNLQDNDLTGTIPAALGNLSKLERLYLDRNKLGGALP
RELGTLRALRVLYLGGNLITGEIPQELAALTDLQQLNLGTGQLRGVEGEE
RLGQLFPNCEISVSSWTNEWG*
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mRNA from alignment at Ecto-sp9_F_contig944:5585..9088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig944.17587.1 ID=mRNA_Ecto-sp9_F_contig944.17587.1|Name=mRNA_Ecto-sp9_F_contig944.17587.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig944:5585..9088+ (Ectocarpus species9 EcSCA_722f female)
CACGGACCCCGGGGTTGTGCAGCACCTGCTGAACGCCCGACACAAGGCCG
AGGAGCTGGCTGCCAACGCGGCCAGTCTCGCAGTCCTCGTGAACAGGTTT
GGGGCGGAGAATGCCGCAATGCCTTCCGAGAGAAATTCCAAGCGTCTCGT
GACAACCGCCTTCCAAGTCATGCAAGTGGACCCCGGCTTCTTGAACGGAG
AGTTGGGCTACATTCGAGAGAAACTGAAAGTTTCAAGGTTGAACCTCGGG
CGTTTTGGTCTGAAAGGCAAGGGGCGTTTCTTAGGGTCTCGGCTTGCTCG
GCCGTAGCGTTGGAGTACCTAGAAGTTGACCTCATGTGAGCGTTTCGCCT
TGGCCCTTCCAACGGGTGTCCGGACGTGGTTGCCGGACCCCCTGCCGCAT
TGCAGTTGCTTCGCTTTCACAAACAGCTGTCCGAACGGTTCTGACCAGTT
TTCCGTGCTTTTTTGTGCAGGATCGCTCCCACCTTCGCTAGGAGACGTGC
TGCAGCTAACAGAGTTAGACCTCAATGGAAACGCACTCGGGGGTGAGTGA
AGACGGAATCAAGATTCGCCAGCAAGGTCTAGATAGAGACCGTCCTTCCC
TCGGTTCTCCCGACCAGTGGGGATTGGATGGGACAATGGTCATGGGCACT
ATCTTTTTTTTTTTGTCGCACTACTGCTGTGGTGCCAACTCTCCGACTTC
TCCGATCCGTGCCAACTGTCCGATGATTACTGCAGCCTACAATGAGAGCG
GCAACCTTTGCGGTTTCGTTTCCGTCGTTGTCGCTTTTCTGGTGGTTGTG
CTTGTCGAGCACAGAAGCAGCGCCGTAATCACCCTATCGAGCTTGGTTGG
GAAGCAGTTAGAACGGCCATAGTGCGCAGGGACTCTTCGTCAAGCCAATT
TCACTCTACCTCGCACAGTCGGAAGGTGTCTCTTTAGGCGCGACCCGCAG
CGTACCGGATGCGATTCGGAGCTCAAAATCTCTGCTCTCCGGCCTCACGT
TTTTCAGGAGTCATCCCGGGGAGTTTCGGGGACCTCACCGCCTTGACCAC
GCTCAACCTCGGGGGCAACAGACTGGTCGGTGAGCTTCTATTCCGTGGGT
CGGTAGTACCTTGAAAAACATTGGAACAGCAGTGTGACGCAGCGAAGTTT
CTATGGGCTCATGGTTCCTCAAGCCGAACTCGACCGGTTTTGTCCCCTAC
CGAAATTCGCACCGTGGACCCTAACCCTCTGAATTCAATGTTCCTGAGAA
GGTCATATACCTCCGGAGCTGGGCGGGCTCCGAGAGCTGCGGGAGCTGAA
CCTTCAAGACAACGACCTTACGGGTGAGATGCTTGCTCCGCAAAGGGAGG
TTTTCGATGTAGTTTGGCGGTGGTGGTGTCGAGAACAAATCAATACGAAG
CCGAGGATCGGTATTAGTTTTGTCAGGATGGGGCCTGTATGACATGCCCG
ACACAAGTTGCTAACACTACCACTTCCCATCGCGACACAACACTCGGCCT
ACCAATTACGCCACCCTGTCCGGCCGTTCACGGAGTGTGCTTTTGCATCC
GCTACTCTGTACAGCGATGAGAGCCACTATCCGACTTATTGCGCCCCAGG
CACTTTTTCTCCACCCTTCCAACCTAAATCCGACAAGGACGCCTCACCAT
GACTTGTGGTCTCTCCTCTCGTCAGCCTAACCCGGACTTCGCTACTGCGC
CTCACCTTCGTACGGTTGTAACTTTGCTATGGTTGCAGGCACCATCCCTG
CCGCGCTTGGGAACCTGAGCAAGCTTGAGCGGCTCTACTTGGATCGCAAC
AAGCTGGGTGGTGAGTCTCAAACATGGCGGCCTCGTCTTGTCCGTAGTTC
TCGACCCCACCGCGAAATATCTTCTCGACATTGGTAAATATTTTGAGTGA
CCCGCGCGAAGCCTCAGCGTGTAAAATTTCTTTGGGGAGGCGTTTTTTTC
CCGGTTGTCGCCAGAAGTCGGATTTGTGACAGGATATTTACCGGTTGTCC
GTCGTGTCTCATTCGTCCGAGGGCAAGCTTTATCCAATCTACCCGGCTTA
TCTCACAACAGTCGGCCGCGAAACGAGAAAATCGAATGGGTCCTATTTCA
GACGGTAACTTTCCACCAAAGGAATGATTCTGAGCGTTGGTCGCCTCCAA
CAACTGCCATCGCAGGCGCGCTGCCCCGGGAGCTGGGAACACTCCGCGCC
CTTCGGGTGCTCTACCTCGGCGGCAACCTTATCACAGGTGCGGGGATCTC
GAAACAGAATTGAGCTCCCTTTCACCGCTCGTCGTGCGCGTGCTCACACG
CCGCCCCTCGCTTGCGTGTTTTGGGTCGGGTTAGACCTTATTTCGTTTTT
TCCCCCTGCCACGGGCGACTACAACGAGCCGACTCGGTCTTCGAGTGCGC
GCTGCCGTCTGGACTCTCGATGTGCGTCCACTCCGAGCCCGGCTACAGTT
GCCATACTTCAGCTGGGTTTGGCGTCCGAAAAACCGTACACCCCTTTCTG
GTAGCTCCGTAACCCTTGTTGGATTCAACCACCCCGAATCCCTTCCACGG
TCGCGATCGCAGGAGAGATCCCCCAGGAGCTGGCGGCACTCACCGATTTG
CAGCAACTAAATCTTGGGACCGGTCAGCTGCGAGGTGAGAGGGGGAGAGC
GGTTTTGTTTCCTACGCAAGTAAATTGGAAGTGATATAGCTGCTGCTGAC
CCACGCTTTGTGGATGCATCCGGTCATGAACATGTGCGGGGATTGTTGCA
CGGCACGGCGGGGTGTAGCAACCACATCTTGGGAGCACTCACTTCCGAGC
TGAGAGGGGCAAACAAGGTTTGAAGGCCCTATCGGCAGCAGTTCGGAGTA
ACATTCGCTCTCCGGGTTTCTTGTGCATGAATTTTGGAATTTTGCCGGGA
AACGACGGCAGGATAAAGGCTGCTTTTCACTGTATCTTGTCGCGTCCTGT
AGAAGCCCTCGCTAAAATAACTAATCTGCAGCCCTTTGCTCAGAACATTG
CGCTCAAGTACCAGAGGGAGGGCGAGTGCATGTAGTTCTCCGCTCATATA
CCCAACATGTCCTTCCTCGTTTACCTTTGTTGAGCTTCGCCCAATGTGAC
CTGCTCTACAACAGGGGTGGAGGGCGAAGAGAGGCTTGGGCAGCTATTCC
CGAACTGCGAAATATCAGTATCGAGCTGGACGAACGAGTGGGGATAGATA
GAGAGAGGATCGTAGAAGCGGCAGCTGGGAAAATCTTGTGCATGGACCAA
TTTTTGTGCTTGGCTGGGATACGACTGCCATGTATTTCAGCAGTATGTTC
TTTTGTTTTGTTTTGTGAATTTACAGAAATCAAGGTTAGAAGCACATAGG
ATGCCAGAAGCTATTTCCAGGAACAATCGGTCACTGAGCGTCGGGTGGTG
GCGGCTGTGTCGTTTGTGTTGTAAGTATGTTTATTGCCGGCCCGACTGCG
GGGTATTTGCTGCCAACTGTAGTATACACGTAGATTCTTGCGGTGACGCT
GAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig944:5585..9088+

>mRNA_Ecto-sp9_F_contig944.17587.1 ID=mRNA_Ecto-sp9_F_contig944.17587.1|Name=mRNA_Ecto-sp9_F_contig944.17587.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp9_F_contig944:5585..9088+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTTCCGAGAGAAATTCCAAGCGTCTCGTGACAACCGCCTTCCAAGT
CATGCAAGTGGACCCCGGCTTCTTGAACGGAGAGTTGGGCTACATTCGAG
AGAAACTGAAAGTTTCAAGGTTGAACCTCGGGCGTTTTGGTCTGAAAGAT
GCCTTCCGAGAGAAATTCCAAGCGTCTCGTGACAACCGCCTTCCAAGTCA
TGCAAGTGGACCCCGGCTTCTTGAACGGAGAGTTGGGCTACATTCGAGAG
AAACTGAAAGTTTCAAGGTTGAACCTCGGGCGTTTTGGTCTGAAAGGATC
GCTCCCACCTTCGCTAGGAGACGTGCTGCAGCTAACAGAGTTAGACCTCA
ATGGAAACGCACTCGGGGGATCGCTCCCACCTTCGCTAGGAGACGTGCTG
CAGCTAACAGAGTTAGACCTCAATGGAAACGCACTCGGGGGAGTCATCCC
GGGGAGTTTCGGGGACCTCACCGCCTTGACCACGCTCAACCTCGGGGGCA
ACAGACTGGTCGGAGTCATCCCGGGGAGTTTCGGGGACCTCACCGCCTTG
ACCACGCTCAACCTCGGGGGCAACAGACTGGTCGAAGGTCATATACCTCC
GGAGCTGGGCGGGCTCCGAGAGCTGCGGGAGCTGAACCTTCAAGACAACG
ACCTTACGGAAGGTCATATACCTCCGGAGCTGGGCGGGCTCCGAGAGCTG
CGGGAGCTGAACCTTCAAGACAACGACCTTACGGGCACCATCCCTGCCGC
GCTTGGGAACCTGAGCAAGCTTGAGCGGCTCTACTTGGATCGCAACAAGC
TGGGTGGCACCATCCCTGCCGCGCTTGGGAACCTGAGCAAGCTTGAGCGG
CTCTACTTGGATCGCAACAAGCTGGGTGGCGCGCTGCCCCGGGAGCTGGG
AACACTCCGCGCCCTTCGGGTGCTCTACCTCGGCGGCAACCTTATCACAG
GCGCGCTGCCCCGGGAGCTGGGAACACTCCGCGCCCTTCGGGTGCTCTAC
CTCGGCGGCAACCTTATCACAGGAGAGATCCCCCAGGAGCTGGCGGCACT
CACCGATTTGCAGCAACTAAATCTTGGGACCGGTCAGCTGCGAGGAGAGA
TCCCCCAGGAGCTGGCGGCACTCACCGATTTGCAGCAACTAAATCTTGGG
ACCGGTCAGCTGCGAGGGGTGGAGGGCGAAGAGAGGCTTGGGCAGCTATT
CCCGAACTGCGAAATATCAGTATCGAGCTGGACGAACGAGTGGGGATAGG
GGTGGAGGGCGAAGAGAGGCTTGGGCAGCTATTCCCGAACTGCGAAATAT
CAGTATCGAGCTGGACGAACGAGTGGGGATAG
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