prot_Ecto-sp9_F_contig940.17562.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig940.17562.1
Unique Nameprot_Ecto-sp9_F_contig940.17562.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length242
Homology
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BLAST of mRNA_Ecto-sp9_F_contig940.17562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 9.400e-116
Identity = 237/243 (97.53%), Postives = 238/243 (97.94%), Query Frame = 0 
Query:    1 MQAPTRANSTAARCRWHRQPQSYHTHQPPLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--APGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGMDKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG 241
            MQAPTRA STAARCRW RQPQSYHTHQ PLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  APGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGM+KGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG
Sbjct:    1 MQAPTRATSTAARCRWRRQPQSYHTHQAPLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGMEKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig940.17562.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.400e-11697.53protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 54..65
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..70
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 66..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig940contigEcto-sp9_F_contig940:26688..28208 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig940.17562.1mRNA_Ecto-sp9_F_contig940.17562.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig940 26291..28208 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig940.17562.1 ID=prot_Ecto-sp9_F_contig940.17562.1|Name=mRNA_Ecto-sp9_F_contig940.17562.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=242bp
MQAPTRANSTAARCRWHRQPQSYHTHQPPLNNNNIRRKKPPRRRSSSSAF
STSLSLLLLAVCCWCGRAAAAAAPGSPLTLRVRMPDGAVKRVKATGADTI
DGILGKLGMDKGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYV
KSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATK
RVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVG*
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