prot_Ecto-sp9_F_contig9390.17550.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9390.17550.1
Unique Name	prot_Ecto-sp9_F_contig9390.17550.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	132

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.770e-70
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    1 GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 132
            GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRV+NAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR
Sbjct:  311 GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVHNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 442

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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: HRDC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.830e-35
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0

Query:   63 MGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 132
            MGTKRGTDRVYNA MKPSFG+GKERGKTETFWKALFHQLVERQGFLEAVSFSS+NGGRSGTTYRLTR+GR
Sbjct:    1 MGTKRGTDRVYNATMKPSFGRGKERGKTETFWKALFHQLVERQGFLEAVSFSSENGGRSGTTYRLTRKGR 70

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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: Werner (syndrome ATP-dependent helicase-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86CFF)

HSP 1 Score: 53.9 bits (128), Expect = 9.690e-6
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0

Query:   35 FTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVYNAAMK-PSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGG 119
            F+  A L++ AV+  GGR+G+T+PI  L G+K  ++R+ +   K P FGKGK   KTE +WK L   L+ R G+LE        GG
Sbjct:  498 FSEDANLMMGAVNALGGRFGLTIPILFLRGSK--SNRLNDHHSKDPLFGKGKH--KTEAYWKNLGRLLI-RAGYLEECESKPFRGG 578

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
ATP-dependent	3.770e-70	99.24	DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=...	[more]
HRDC	1.830e-35	94.29	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Werner	9.690e-6	41.86	syndrome ATP-dependent helicase-like n=1 Tax=Ischn...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018982	RQC domain	PFAM	PF09382	RQC	coord: 35..129 e-value: 1.1E-8 score: 34.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 28..132 e-value: 6.5E-15 score: 56.7
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 36..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9390	contig	Ecto-sp9_F_contig9390:1385..3671 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9390.17550.1	mRNA_Ecto-sp9_F_contig9390.17550.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9390 1385..3671 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9390.17550.1 ID=prot_Ecto-sp9_F_contig9390.17550.1|Name=mRNA_Ecto-sp9_F_contig9390.17550.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=132bp
GDSKCDGCDVCDRTAAAAAASANGATATNEDVELFTGPARLVLQAVHDSG
GRYGITVPIGLLMGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQ
LVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018982	RQC_domain
IPR036388	WH-like_DNA-bd_sf
IPR036390	WH_DNA-bd_sf