prot_Ecto-sp9_F_contig9374.17535.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9374.17535.1
Unique Nameprot_Ecto-sp9_F_contig9374.17535.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length778
Homology
BLAST of mRNA_Ecto-sp9_F_contig9374.17535.1 vs.
Match: EstExt_Genewise1.C_60040 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN09_ECTSI)

HSP 1 Score: 838 bits (2165), Expect = 2.310e-290
Identity = 493/617 (79.90%), Postives = 501/617 (81.20%), Query Frame = 0
Query:  162 MSARCQVHPAVMQDLGLYPGDPVLALTLVGGRPSSAAXXXXXXXXXXAGSANVGDTASGVFKGPAPTADNFAPGGTLELRCLLCTIWANPHLALAETAVDGRIHIPVPASTLAVAVSSDASLPITGAVAATTECPADPPSPPSDAARAAAAESPSPTATTVDPPAQNLIARFLRAASASGREAEKDGEGYQVVGIVPVRSLRNGPGTGTPAGGRAGRGGDASPPAAGRVSARVLRSSRRHRGSAVRFLGRMGGTAVGXXXXXXXXXXXXXXXXXXXXXXXAFGHPFQQRQQQRCLPPEYTSLLKRSLRHLVVTDGCEVAVPSCPRSTGTILEGPTAAGVGGSANGDGXXXXXXXGKEHLPADGTTFLRIGIEDKGGGDGRRGEGDALTSLLGGAVCVVGPESLVLVESEESRGVGARDSDAEAGPRHKGVRALDGASGVGRGSPGNDRQRREEVSREPRPRDGGNRGVGKVSTMTPTEALMELMLLPMTATTPAKAAGGGELKPLESLAPRGVLLTGPPGVGKTFAVRSAVEAVRNAAPHPSFSGTGRGEIDGPFQVRLTTLNGAEILSLGQWEACQALREAFSAAEKWSKGEGXXXXXXKRSEGMFGDGVGGLVGR 778
            MSARCQVHPAVMQDLGLYPGDPVLALTLVGGR     XXXXXXXXXX GS +VG TASGVFKGPAPTADNFAPGGTLELRCLLCTIWANPHLALAETAVDGRIHIPV                                                  ATTVDPPAQNLIARFLRAA+ASGREAEKDGEGYQVVGIVPVRSLRNGPGTGTP G RAGRGGDASPPAAGRVSARVLRSSRRHRGSAV FLG MGGTAV        XXXX     X XXXXX       QRQQQR LPPEYTSLLKRSLRHLVVTD CEVAVPSCPRSTGTILEGPTAAGVG SANGDG   XXX GKEHLPADGTTFLRIG+ DKGGGDGRRGEG ALTSLLGGAVCVVGPESLVLVESEESRGVGARDSD EAGPRHKGVR LDGAS  GRGSPGNDRQRREEVSREPRPRDGGNRGV KVSTMTPTEALMELMLLPMTATTPAKAAGG ELKPLESL PRGVLLTGPPGVGKTFAVRSAVEAVRNAAP PSFSGTGRGE+DGPFQVRLTTLNGAEILSLGQWEACQALR+AFSAAE+WSKGEG       R   +F D    L+ R
Sbjct:    1 MSARCQVHPAVMQDLGLYPGDPVLALTLVGGRSXXXXXXXXXXXXXXXGSESVGGTASGVFKGPAPTADNFAPGGTLELRCLLCTIWANPHLALAETAVDGRIHIPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTVDPPAQNLIARFLRAANASGREAEKDGEGYQVVGIVPVRSLRNGPGTGTPVGRRAGRGGDASPPAAGRVSARVLRSSRRHRGSAVGFLGGMGGTAVAAAAGVTGXXXXESDASXLXXXXXXXXXXXXQRQQQRYLPPEYTSLLKRSLRHLVVTDSCEVAVPSCPRSTGTILEGPTAAGVGESANGDGGGSXXXGGKEHLPADGTTFLRIGVGDKGGGDGRRGEGGALTSLLGGAVCVVGPESLVLVESEESRGVGARDSDVEAGPRHKGVRVLDGASAGGRGSPGNDRQRREEVSREPRPRDGGNRGVRKVSTMTPTEALMELMLLPMTATTPAKAAGGAELKPLESLVPRGVLLTGPPGVGKTFAVRSAVEAVRNAAPRPSFSGTGRGEMDGPFQVRLTTLNGAEILSLGQWEACQALRDAFSAAEEWSKGEGGGRARGNRCAVIFLDEADALLAR 617          
BLAST of mRNA_Ecto-sp9_F_contig9374.17535.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI82_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-6
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 0
Query:  640 ALMELMLLPMTATTPAKAAGGGELKPLESLAPRGVLLTGPPGVGKTFAVRSAVEAVRNAAPHPSFSGTGRGEIDGPFQVRLTTLNGAEILSLGQWEACQALREAFSAAEKWSKGE 754
            AL EL+LLP+ A    ++  G E        P+GVLL GPPGVGKT  VR+ V   R         G+G+     P  ++L  +NGAEIL+ G+ +A QALR  F+AA   ++ E
Sbjct:  260 ALRELILLPV-AYPRLRSELGVEF-------PKGVLLCGPPGVGKTLLVRAVVHECRQQQ-----DGSGQ-----PLNLKLQVINGAEILTSGRGDAEQALRATFAAAVSHTRSE 356          
BLAST of mRNA_Ecto-sp9_F_contig9374.17535.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RR43_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.590e-5
Identity = 48/127 (37.80%), Postives = 64/127 (50.39%), Query Frame = 0
Query:  626 NRGVGKVSTMTPTEALMELMLLPMTATTPAKAAGGGELKPLESLAPRGVLLTGPPGVGKTFAVRSAVEAVRNAAPHPSFSGTGRGEIDGPFQVRLTTLNGAEILSLGQWEACQALREAFSAAEKWSK 752
            N+GV      T   AL EL+LLP+ A    ++  G E        P+GVLL GPPGVGKT  VRS V   R         G+G         + L  +NG+EI++ G+ +A QALR+ F  A   S+
Sbjct:  143 NQGVTMGGMETERGALRELILLPV-AHPRLRSELGVEF-------PKGVLLCGPPGVGKTLLVRSVVHECRQVQ-----DGSGA-----TLDLNLQVINGSEIMTSGRGDAEQALRDTFKTAVTHSR 251          
BLAST of mRNA_Ecto-sp9_F_contig9374.17535.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJL5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.240e-5
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 0
Query:  637 PTEALMELMLLPMTATTPAKAAGGGELKPLESLAPRGVLLTGPPGVGKTFAVRSAVEAVRNAAPHPSFSGTGRGEIDGPFQVRLTTLNGAEILSLGQWEACQALREAFSAA 747
            P E L +++LLP  A       G G    +  L P+GVLL GPPGVGKT AVR+ V+ V +   HPS        + G   VR  +L GA+I+  G  +A + LR  F  A
Sbjct:   34 PFELLRDMVLLPAHARL---VQGSG----VAHLQPKGVLLYGPPGVGKTHAVRTVVDHVNH---HPS--------LQGMVAVRFWSLLGADIIGRGIGDAEEELRRVFQEA 126          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9374.17535.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
EstExt_Genewise1.C_600402.310e-29079.90n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN09_ECTSI[more]
Uncharacterized1.080e-640.87protein (Fragment) n=2 Tax=Nothophytophthora sp. C... [more]
Uncharacterized1.590e-537.80protein n=1 Tax=Phytophthora kernoviae TaxID=32545... [more]
Hypothetical3.240e-539.64protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 674..749
e-value: 2.3E-4
score: 21.6
NoneNo IPR availableGENE3D3.40.50.300coord: 639..755
e-value: 1.3E-7
score: 33.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 668..750

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9374contigEcto-sp9_F_contig9374:12..4150 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9374.17535.1mRNA_Ecto-sp9_F_contig9374.17535.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9374 12..4733 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9374.17535.1 ID=prot_Ecto-sp9_F_contig9374.17535.1|Name=mRNA_Ecto-sp9_F_contig9374.17535.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=778bp
MGPATIAGDGDHHHHHHVPPPLLLLQPAHLRLYGYDAEFSFPSRRRRLPA
ADGPPFKTATTAAAAAAAAAGKYTPGVVGGSNSDDRDEEGQATAGDAFGA
SSSGAPASRRHHSSSPEAGAKQQQQHQQQHQQQEQHSGASALQRETRSGS
RRTKLPLPPPAMSARCQVHPAVMQDLGLYPGDPVLALTLVGGRPSSAAAA
SSLISAAAAGSANVGDTASGVFKGPAPTADNFAPGGTLELRCLLCTIWAN
PHLALAETAVDGRIHIPVPASTLAVAVSSDASLPITGAVAATTECPADPP
SPPSDAARAAAAESPSPTATTVDPPAQNLIARFLRAASASGREAEKDGEG
YQVVGIVPVRSLRNGPGTGTPAGGRAGRGGDASPPAAGRVSARVLRSSRR
HRGSAVRFLGRMGGTAVGEAAGVTGGIPGESDASSLPASPPAFGHPFQQR
QQQRCLPPEYTSLLKRSLRHLVVTDGCEVAVPSCPRSTGTILEGPTAAGV
GGSANGDGGGSGDGGGKEHLPADGTTFLRIGIEDKGGGDGRRGEGDALTS
LLGGAVCVVGPESLVLVESEESRGVGARDSDAEAGPRHKGVRALDGASGV
GRGSPGNDRQRREEVSREPRPRDGGNRGVGKVSTMTPTEALMELMLLPMT
ATTPAKAAGGGELKPLESLAPRGVLLTGPPGVGKTFAVRSAVEAVRNAAP
HPSFSGTGRGEIDGPFQVRLTTLNGAEILSLGQWEACQALREAFSAAEKW
SKGEGGGGGGGKRSEGMFGDGVGGLVGR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase