prot_Ecto-sp9_F_contig9341.17500.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9341.17500.1
Unique Name	prot_Ecto-sp9_F_contig9341.17500.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	113

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9341.17500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.380e-33
Identity = 75/113 (66.37%), Postives = 76/113 (67.26%), Query Frame = 0

Query:    1 MATSRDIKERXXXXXXXXXXXXXXXXXXXXXVGVCRXXXXXXXXXXXXPTSSAAKIGDHAARATPSSATAFQVAGNPWLSSATGGPRNRASSDPSRACNNLADSRGTATCGTG 113
            M TSRDIKER                     VGVCR            P SSAAKIGDHAA ATPSSATAFQVAGNPWLSS TGGPRNRAS+DPSRACNNLADSRGTATCGTG
Sbjct:    1 MTTSRDIKERKRRMGRRGGELAAALALVVGGVGVCRAAASTTHGAAGGPISSAAKIGDHAASATPSSATAFQVAGNPWLSSTTGGPRNRASTDPSRACNNLADSRGTATCGTG 113

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9341.17500.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9341.17500.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	5.380e-33	66.37	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 33..37
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 21..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 38..113
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..37
None	No IPR available	TMHMM	TMhelix		coord: 21..40

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9341	contig	Ecto-sp9_F_contig9341:1978..4095 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9341.17500.1	mRNA_Ecto-sp9_F_contig9341.17500.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9341 1883..4095 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9341.17500.1 ID=prot_Ecto-sp9_F_contig9341.17500.1|Name=mRNA_Ecto-sp9_F_contig9341.17500.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp
MATSRDIKERRRRRGRRGGELAAALALVVGGVGVCRAAASTTHGAAGGPT
SSAAKIGDHAARATPSSATAFQVAGNPWLSSATGGPRNRASSDPSRACNN
LADSRGTATCGTG