mRNA_Ecto-sp9_F_contig9341.17500.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9341.17500.1
Unique NamemRNA_Ecto-sp9_F_contig9341.17500.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9341.17500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.790e-32
Identity = 75/113 (66.37%), Postives = 76/113 (67.26%), Query Frame = 3 
Query:   96 MATSRDIKERXXXXXXXXXXXXXXXXXXXXXVGVCRXXXXXXXXXXXXPTSSAAKIGDHAARATPSSATAFQVAGNPWLSSATGGPRNRASSDPSRACNNLADSRGTATCGTG 434
            M TSRDIKER                     VGVCR            P SSAAKIGDHAA ATPSSATAFQVAGNPWLSS TGGPRNRAS+DPSRACNNLADSRGTATCGTG
Sbjct:    1 MTTSRDIKERKRRMGRRGGELAAALALVVGGVGVCRAAASTTHGAAGGPISSAAKIGDHAASATPSSATAFQVAGNPWLSSTTGGPRNRASTDPSRACNNLADSRGTATCGTG 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9341.17500.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.790e-3266.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9341contigEcto-sp9_F_contig9341:1883..4095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size434
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9341.17500.1prot_Ecto-sp9_F_contig9341.17500.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9341 1978..4095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.1884708-UTR-Ecto-sp9_F_contig9341:1882..19771622931013.1884708-UTR-Ecto-sp9_F_contig9341:1882..1977Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9341 1883..1977 +
1692278992.8239725-UTR-Ecto-sp9_F_contig9341:1882..19771692278992.8239725-UTR-Ecto-sp9_F_contig9341:1882..1977Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9341 1883..1977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.2097874-CDS-Ecto-sp9_F_contig9341:1977..21461622931013.2097874-CDS-Ecto-sp9_F_contig9341:1977..2146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9341 1978..2146 +
1692278992.8324661-CDS-Ecto-sp9_F_contig9341:1977..21461692278992.8324661-CDS-Ecto-sp9_F_contig9341:1977..2146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9341 1978..2146 +
1622931013.227922-CDS-Ecto-sp9_F_contig9341:3925..40951622931013.227922-CDS-Ecto-sp9_F_contig9341:3925..4095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9341 3926..4095 +
1692278992.8407984-CDS-Ecto-sp9_F_contig9341:3925..40951692278992.8407984-CDS-Ecto-sp9_F_contig9341:3925..4095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9341 3926..4095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9341.17500.1

>prot_Ecto-sp9_F_contig9341.17500.1 ID=prot_Ecto-sp9_F_contig9341.17500.1|Name=mRNA_Ecto-sp9_F_contig9341.17500.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp
MATSRDIKERRRRRGRRGGELAAALALVVGGVGVCRAAASTTHGAAGGPT
SSAAKIGDHAARATPSSATAFQVAGNPWLSSATGGPRNRASSDPSRACNN
LADSRGTATCGTG
back to top

mRNA from alignment at Ecto-sp9_F_contig9341:1883..4095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9341.17500.1 ID=mRNA_Ecto-sp9_F_contig9341.17500.1|Name=mRNA_Ecto-sp9_F_contig9341.17500.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2213bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9341:1883..4095+ (Ectocarpus species9 EcSCA_722f female)
CACAGAGCTTGGCGTAGAGACCAAGATAAAGAGGAGAGCAAAGGGGTTGG
TCAAAGCCTAAAGGGGGTAGATCTTGCAGCATCTATCTGCCGGCCATGGC
TACCTCCCGGGACATCAAGGAGAGGAGGAGAAGGAGGGGCCGTAGAGGAG
GGGAGCTGGCAGCAGCTTTGGCGCTCGTGGTAGGAGGCGTTGGGGTATGC
AGGGCTGCCGCCTCGACGACGCATGGTGCCGCCGGTGGTCCTACCTCTTC
TGCTGCCAAGATAGGTGGGAGTTGGCGGCGTACGAAAGGGGCGGAAGAAG
GCTCTGCACCTTGGTTGAGCGTATCGCACAGGGCGTTTGTTGGCTAGAAA
ACATCTCTGTCTCATCAGCCCTCAGGGTATCGAAGGAAGGAAACAAACGA
ACCAGGTGGCAGCGGCATGTTGTTGGTGGTGAAGTGAAGTAAGTGCATGT
ACCCAATGTTTCGCTTTGAGTTCTCTTTGCATCACAGCGGCTGTGTATAC
CTGCTGCCGCGCGTAGCTCCCCGCAGGGCTCTAAAGCCAGGCGGAATGTA
TGCGGTCGGTACGTGCTCGCACGCGGCCTGTGGCACCGGTAGCGTGTGAG
GCAACGACGGTGGTTGATGTATTTCATACCGTCCTTCGCCGCGGGCCGTT
TGGTGACTTTAAACACAGATTTTAAATTCGATGAAATATGTAGGAAAGAC
TGTGGGTATATCTCGAATGGGTAGTCTTTCTGTGCGTGTAATTATTTTTC
CTTAGTTCCTACTCGTGTTGTTTCCTTATCCGGGGGCTGGTATGTATCGT
GCACCAGCTGCTGGCGCTACTCCTGGTACTAAGTGCCACCAGCGGATCTT
TCCGGCAATCTCCATCCCATTTCCCTGGGTCAGTTTTTTCGTTTCAACTC
GGAGAGCGTTTGGGACAGCAAAAGATTCAGCACATCGAGACAAACAGACA
GACATGCCTCCGTCAGTTTGGTTTTTCTGTTCAACGGTTGGTGCTTCAAG
CAACACGCAAATCGTGTCCCAAGAGGTGCGGTAGTCTAGACTGGTGCCCC
CACAGCAGACAAGATGTGACGAAAACATTATACAACACACACAACAAACA
CACACGGGTTCGCCATTTCCAGGCAAACGCTGCACATCGCATTATTCAAC
GGATGTGTTGACAACAGCAGTAGCGAAAGATCTTCGATATTGGAAAACCG
GATTTATTTTGAGTCTCCTCTTTTTCTAGTACAAACGATGCAAGACTCCG
TTATTCCAGCCGGTTCACTAAATACGACGTCACCTTCTAGAGATGCGAGA
TCTTGGGCGTAGAAGGGCCGTCATGATGCATCCAGCCGGGCGTCGTGATG
CATCGAGCGGGGGAGCCGGAGGAATGGTAGGTTTGGCGAGTTTTTTTCAG
GGCACCGCCCGCTCCTGCCTCCGGTGCAAACCTGAAGAATGGTTTATCAT
TGTGTGCTACCTACATGTTGTAGGCATGCCGCCTACGCAAGAGGTTGGGG
AGAATTCCTCCTGTGTCGTGCGCTAATAGCAAGCCTCTCCCTATGTTAGA
GGAATACTCTCACATCGCGGTGTATGCGGATATCTCTAAAGAGCTGCGGC
AACTTGTAAAAGGTCTCGGTGGACCCAGCTCGGTGGACCCAATTATAAGA
AGGAGAGAGTCCCGTGTGTTGTGTTTTCGTTCGGGTTTACTCTCGCGGCC
TCTAACTGCTGTGTCGAGTGTGGCGTGACATCCCGCCGACGTGTCGTGTG
TCGTGCCTTTCGGACGGGATAAGACCCTAGTTTGGACGCGCATGGTTTTT
GGAGATACATAAGAGGCACTTGTGCATATGTTGCGTGTGAAAACATGCCA
ACAATATAATGCGGCAACGACCACACACAGCCCCCAACAAGAACCATGCA
TGCAATCTTCGCATATCAAGAACGACGCCCGTTAAGGTTATCGTTGTAGT
CATTCTGATCCTCTTCGTATACGGATGCGTCTGCCACCCACCCACCCACC
CCCGGGCGCGCACGCACGCCCGTCAACTCTCTCTCTACAGCAGGTGATCA
TGCGGCCAGGGCGACACCGTCGTCGGCTACCGCCTTCCAGGTGGCCGGAA
ACCCTTGGCTGTCGTCCGCAACCGGAGGCCCGCGAAATCGCGCTTCTTCC
GACCCCTCTCGCGCCTGCAACAACCTTGCCGACAGCAGGGGCACCGCGAC
ATGCGGCACGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9341:1883..4095+

>mRNA_Ecto-sp9_F_contig9341.17500.1 ID=mRNA_Ecto-sp9_F_contig9341.17500.1|Name=mRNA_Ecto-sp9_F_contig9341.17500.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9341:1883..4095+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTACCTCCCGGGACATCAAGGAGAGGAGGAGAAGGAGGGGCCGTAG
AGGAGGGGAGCTGGCAGCAGCTTTGGCGCTCGTGGTAGGAGGCGTTGGGG
TATGCAGGGCTGCCGCCTCGACGACGCATGGTGCCGCCGGTGGTCCTACC
TCTTCTGCTGCCAAGATAGATGGCTACCTCCCGGGACATCAAGGAGAGGA
GGAGAAGGAGGGGCCGTAGAGGAGGGGAGCTGGCAGCAGCTTTGGCGCTC
GTGGTAGGAGGCGTTGGGGTATGCAGGGCTGCCGCCTCGACGACGCATGG
TGCCGCCGGTGGTCCTACCTCTTCTGCTGCCAAGATAGGTGATCATGCGG
CCAGGGCGACACCGTCGTCGGCTACCGCCTTCCAGGTGGCCGGAAACCCT
TGGCTGTCGTCCGCAACCGGAGGCCCGCGAAATCGCGCTTCTTCCGACCC
CTCTCGCGCCTGCAACAACCTTGCCGACAGCAGGGGCACCGCGACATGCG
GCACGGGGGTGATCATGCGGCCAGGGCGACACCGTCGTCGGCTACCGCCT
TCCAGGTGGCCGGAAACCCTTGGCTGTCGTCCGCAACCGGAGGCCCGCGA
AATCGCGCTTCTTCCGACCCCTCTCGCGCCTGCAACAACCTTGCCGACAG
CAGGGGCACCGCGACATGCGGCACGGGG
back to top