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Homology
BLAST of mRNA_Ecto-sp9_F_contig924.17408.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMX6_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.220e-44 Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0
Query: 534 EMLAGQAKTNGDMAPVPMADVVXXXXXXXXXXXXXXXXXXXXXVELLRRDRRLNVGTEGVRYYHPGARGPKHLTLTLEHLEWFATAFDRCDDSILRRRALGLVDAIRVESEHK 646
EMLAGQAKT+GDMAPVPMADVVXXXXXXXXXXXXXXXXXXXX VELLRRDRRLNVGTEGVRYYHPGARGPKHLTLTLEHLEWFATAFDRCDDSILRRRALGLVDAIRVESEHK
Sbjct: 452 EMLAGQAKTDGDMAPVPMADVVXXXXXXXXXXXXXXXXXXXXLVELLRRDRRLNVGTEGVRYYHPGARGPKHLTLTLEHLEWFATAFDRCDDSILRRRALGLVDAIRVESEHK 564
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 181..241
e-value: 2.4E-9
score: 37.1
coord: 286..346
e-value: 1.8E-12
score: 47.2 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 265..299
e-value: 2.6E-5
score: 22.1
coord: 125..158
e-value: 7.1E-7
score: 27.0
coord: 335..368
e-value: 8.9E-7
score: 26.7
coord: 231..264
e-value: 5.1E-6
score: 24.3
coord: 195..229
e-value: 3.0E-6
score: 25.1
coord: 510..536
e-value: 1.8E-5
score: 22.6
coord: 162..194
e-value: 4.8E-7
score: 27.5
coord: 441..474
e-value: 7.9E-6
score: 23.7
coord: 301..334
e-value: 3.0E-6
score: 25.1
coord: 475..506
e-value: 6.8E-7
score: 27.1
coord: 555..583
e-value: 6.1E-5
score: 20.9
coord: 405..439
e-value: 9.0E-6
score: 23.6
coord: 371..403
e-value: 2.3E-4
score: 19.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 555..583
e-value: 1.9E-4
score: 21.5
coord: 510..536
e-value: 5.7E-4
score: 19.9
coord: 125..155
e-value: 4.6E-5
score: 23.4 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 263..297
score: 10.918 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 473..507
score: 11.192 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 508..542
score: 8.714 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 403..437
score: 11.827 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 553..583
score: 9.668 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 438..472
score: 10.183 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 228..262
score: 11.751 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 123..157
score: 12.584 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 298..332
score: 12.057 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 193..227
score: 11.488 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 333..367
score: 12.211 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 368..402
score: 9.657 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 158..192
score: 11.63 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 379..478
e-value: 3.9E-10
score: 39.5 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 289..363
e-value: 4.9E-20
score: 73.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 369..485
e-value: 1.4E-33
score: 117.8
coord: 188..276
e-value: 2.4E-27
score: 97.4 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 94..187
e-value: 2.4E-21
score: 78.6
coord: 488..590
e-value: 1.5E-18
score: 69.4 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 116..284
coord: 273..400
coord: 381..542 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_Ecto-sp9_F_contig924.17408.1 ID=prot_Ecto-sp9_F_contig924.17408.1|Name=mRNA_Ecto-sp9_F_contig924.17408.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=647bp
MVRAQIASTRVAPPAAARCTSWTAPSRLARDSNRMLPPPSPRLKRNARCR
SLQQEMSVATIHGEKGVTKGEACSNLPLVVQIRQRNRRRSKLIQTLKSQG
RKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVM
RSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQMRSEGLSPNVVCFNTA
ADACARAGQWERALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALG
LLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAADCPPNVQ
TYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQW
QEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGI
RGDEVSFTAAIDACAQGGAWEMALTLLDEMRHEGIPPTVRSFSTAISACG
KGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKM
SSAGVPRGTITYNAVIAACGKGKEWARAVSLLHEMLAGQAKTNGDMAPVP
MADVVSYSAAIDACVRAGEWEEAISLVELLRRDRRLNVGTEGVRYYHPGA
RGPKHLTLTLEHLEWFATAFDRCDDSILRRRALGLVDAIRVESEHK* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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