prot_Ecto-sp9_F_contig9106.17295.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9106.17295.1
Unique Nameprot_Ecto-sp9_F_contig9106.17295.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length135
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9106.17295.1 vs.
Match: ATP-dependent (DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 1.430e-85
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 
Query:    1 MMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRSKADGWRYYNNRRTGR 134
            MMGQDMGVVCIVDSLRCLKE+SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARR+KADGWRYYNNRRTGR
Sbjct:  869 MMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGWRYYNNRRTGR 1002
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BLAST of mRNA_Ecto-sp9_F_contig9106.17295.1 vs.
Match: ATP-dependent (DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 2.240e-83
Identity = 130/134 (97.01%), Postives = 134/134 (100.00%), Query Frame = 0 
Query:    1 MMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRSKADGWRYYNNRRTGR 134
            MMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMP+AHNAMGDVVGLERILSAPGINEGWRGVASSHP+CQIPVPRSLAELQAATNIAAR+RKPPARR+KADGWRYYNNRRTGR
Sbjct: 1268 MMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPRSLAELQAATNIAARSRKPPARRTKADGWRYYNNRRTGR 1401
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BLAST of mRNA_Ecto-sp9_F_contig9106.17295.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4X3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.500e-11
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0 
Query:    4 QDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVAS 85
            +D G+   VD+L+ +K N LWR   +      RP +F L  V+ H+    M  AHNA+GD++GLE IL +P +N  W+ +A+
Sbjct:  402 RDTGIQTSVDTLQMMKTNKLWRSSRTYSSALPRPSSFGLSNVYSHILKKPMKTAHNAVGDILGLEEILMSPTLN-CWKSIAN 482
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BLAST of mRNA_Ecto-sp9_F_contig9106.17295.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I7J2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.590e-8
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 0 
Query:    3 GQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPP 115
            GQ+ GVV  + +LR  +  ++W     D  +P  P ++K   +FEHL G EM  AHNA GDV+GLERIL        WR  A    +     P  +A L    ++   T +PP
Sbjct: 1288 GQE-GVVSFMCTLRLFRNKAVWH----DMRVPA-PPSYKQEVIFEHLVGEEMSAAHNAAGDVLGLERILVESSAGPIWRKHAMRAQTLTAIPPGMVASLG---HVPGLTFRPP 1391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9106.17295.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
ATP-dependent1.430e-8598.51DNA helicase RecG n=1 Tax=Ectocarpus siliculosus T... [more]
ATP-dependent2.240e-8397.01DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
Hypothetical5.500e-1139.02protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical5.590e-836.28protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..77
e-value: 6.2E-8
score: 34.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9106contigEcto-sp9_F_contig9106:1032..2349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9106.17295.1mRNA_Ecto-sp9_F_contig9106.17295.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9106 431..2889 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9106.17295.1 ID=prot_Ecto-sp9_F_contig9106.17295.1|Name=mRNA_Ecto-sp9_F_contig9106.17295.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
MMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLY
GYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAE
LQAATNIAARTRKPPARRSKADGWRYYNNRRTGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf