prot_Ecto-sp9_F_contig9008.17199.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9008.17199.1
Unique Nameprot_Ecto-sp9_F_contig9008.17199.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length405
Homology
BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP75_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.120e-49
Identity = 150/431 (34.80%), Postives = 223/431 (51.74%), Query Frame = 0
Query:    1 MYLLVTIVAADLWGGCALCLEGLGSVD-FAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVLEAVGLSFFLAVLAIKVTEN-GTIVSRYSSNS-CDEW-DFCPYDTFYTWWFVLFLHPTSVTVCS---------LMASSFVSTPVGRGPLSCVDRSPRGLAFGCLMLFWLVVAIAQVVVRVTVFFAEYVALGCSIPVVLCRH--RELRTHLVQGLRTFRTTVHQRQRKYLLLGGLIV----VSVTSLFSWLRD-----------VGDPAVDFLDAVLFLALVTWLVSGLFAACGVPAADISLTTRVQWFITGCGSV-GLTWMMVDMVNLLIPESPFGLLVLELGYLT----WMLIVGSFLWGEKSGTYGVAFWAAATQLRVMITLCSQIWLE 396
            MYLL++I  ADL GG AL +EG GS D F W T RR FG  L+ TF+ LIGASVRVLF+SS +N+ LVIGAAAVLFIADVDEK   VLKN  GK RL WVLE +G+SF LA  ++K T+N G +  + +  S C  W + C     +TW ++ F  P +VTV           L+A  +VS P                        W+++    +V+ V V           + VV+ R   REL     QG   F T   +R+R YL   G++V    V++T+++  L D             + A+ FLDA++ LA+ +W + G+  + G P+ DI++   +Q  + G G   G+  ++  +   +   S F   ++ +   +    W +++G+++W    G   VA+W AA+ L   + LC   W++
Sbjct:  107 MYLLLSIAVADLCGGSALVVEGRGSGDDFVWFTGRRLFGVFLVVTFLTLIGASVRVLFFSSQDNVTLVIGAAAVLFIADVDEKAHTVLKNFSGKSRLCWVLEIIGMSFVLATFSLKATDNYGRVAGKDAYKSDCAGWGNDCG---IFTWQYIFFELPLTVTVSRPTLAMEHVLLLALCWVSMPY--------------------FFRWIILLAVAIVLFVVV-----------VAVVIARRSFRELYRAFTQGAERF-TATDKRRRFYLFWAGIVVQLLRVALTAMYFSLSDNDQLVFSESIFSAEDAISFLDALVHLAIFSWWICGMGISEG-PSRDIAIDPPLQPMLLGWGLYYGVLIVLTLVFEWIRGPSDFADAMVYIAEWSVRHCWNIMIGTWVW-RAEGKKDVAYWIAASGLVFTMGLCVAAWVD 500          
BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F1_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.570e-48
Identity = 125/272 (45.96%), Postives = 157/272 (57.72%), Query Frame = 0
Query:    1 MYLLVTIVAADLWGGCALCLEGLGSVD-FAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVLEAVGLSFFLAVLAIKVTEN-GTIVSRYSSNS-CDEWDFCPYDTFYTWWFVLFLHPTSVTVCSLMASSFVSTPVGRGPLSCV---DRSPRGLAFGCLMLFWLVVAI----AQVVVRVTVFFAEYVALGCSIPVVLCRH-RELRTHLVQGLRTFRTTVHQRQRKYLLLGGLIV 261
            MYLL++I  ADL GGCAL +EG GS D F W T RR FG  L+ T + LIGASVRVLF+SS +N+ LVIGAAAVLFIADVDEK   VLKNV GKWRLFWVLE +G+SF LA  ++K T N G +  R    + C  W        +TW ++    P +VTVC+L+ +S VS P+   P+      DR  +   F  L L W+ +        V   V V F   VAL     V+ CR  REL     +G   F  T  +R+R YL   G++V
Sbjct:  121 MYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPIS--PIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVAL-----VIACRSFRELYRAFTRGAERFSAT-DKRRRFYLFWAGMVV 384          
BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.100e-38
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0
Query:    1 MYLLVTIVAADLWGGCALCLEGLGSVDFAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADV 79
            MYLL+TIVAADLWGGCALCLEGLGS DFAWCT+RRAFG C+LGTFVALIGAS+RVLFYSSFENMELVIGAAAVLFIADV
Sbjct:  208 MYLLLTIVAADLWGGCALCLEGLGSADFAWCTRRRAFGVCMLGTFVALIGASIRVLFYSSFENMELVIGAAAVLFIADV 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.120e-4934.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.570e-4845.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.100e-3892.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 185..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 273..283
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 115..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 396..404
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 165..184
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..164
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 372..395
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 344..365
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 304..314
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..332
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 227..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 366..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 333..343
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 253..272
NoneNo IPR availableTMHMMTMhelixcoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 373..395
NoneNo IPR availableTMHMMTMhelixcoord: 146..168
NoneNo IPR availableTMHMMTMhelixcoord: 317..339
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 253..272
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 344..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9008contigEcto-sp9_F_contig9008:3037..4521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9008.17199.1mRNA_Ecto-sp9_F_contig9008.17199.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9008 2818..4604 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9008.17199.1 ID=prot_Ecto-sp9_F_contig9008.17199.1|Name=mRNA_Ecto-sp9_F_contig9008.17199.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=405bp
MYLLVTIVAADLWGGCALCLEGLGSVDFAWCTQRRAFGACLLGTFVALIG
ASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVL
EAVGLSFFLAVLAIKVTENGTIVSRYSSNSCDEWDFCPYDTFYTWWFVLF
LHPTSVTVCSLMASSFVSTPVGRGPLSCVDRSPRGLAFGCLMLFWLVVAI
AQVVVRVTVFFAEYVALGCSIPVVLCRHRELRTHLVQGLRTFRTTVHQRQ
RKYLLLGGLIVVSVTSLFSWLRDVGDPAVDFLDAVLFLALVTWLVSGLFA
ACGVPAADISLTTRVQWFITGCGSVGLTWMMVDMVNLLIPESPFGLLVLE
LGYLTWMLIVGSFLWGEKSGTYGVAFWAAATQLRVMITLCSQIWLEVLLS
GDVK*
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