mRNA_Ecto-sp9_F_contig9008.17199.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9008.17199.1
Unique NamemRNA_Ecto-sp9_F_contig9008.17199.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 2.150e-54
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 3 
Query:    3 QSQTSSIDDDYYADGSPDYSIVAIAGAMYLLVTIVAADLWGGCALCLEGLGSVDFAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADV 320
            QSQTS+IDDD+YAD SPDYSI+AIAGAMYLL+TIVAADLWGGCALCLEGLGS DFAWCT+RRAFG C+LGTFVALIGAS+RVLFYSSFENMELVIGAAAVLFIADV
Sbjct:  181 QSQTSAIDDDFYADRSPDYSILAIAGAMYLLLTIVAADLWGGCALCLEGLGSADFAWCTRRRAFGVCMLGTFVALIGASIRVLFYSSFENMELVIGAAAVLFIADV 286
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BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP75_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 4.220e-53
Identity = 157/441 (35.60%), Postives = 232/441 (52.61%), Query Frame = 3 
Query:   54 DYSIVAIAGAMYLLVTIVAADLWGGCALCLEGLGSVD-FAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVLEAVGLSFFLAVLAIKVTEN-GTIVSRYSSNS-CDEW-DFCPYDTFYTWWFVLFLHPTSVTVCS---------LMASSFVSTPVGRGPLSCVDRSPRGLAFGCLMLFWLVVAIAQVVVRVTVFFAEYVALGCSIPVVLCRH--RELRTHLVQGLRTFRTTVHQRQRKYLLLGGLIV----VSVTSLFSWLRD-----------VGDPAVDFLDAVLFLALVTWLVSGLFAACGVPAADISLTTRVQWFITGCGSV-GLTWMMVDMVNLLIPESPFGLLVLELGYLT----WMLIVGSFLWGEKSGTYGVAFWAAATQLRVMITLCSQIWLE 1271
            DYSI+AIA +MYLL++I  ADL GG AL +EG GS D F W T RR FG  L+ TF+ LIGASVRVLF+SS +N+ LVIGAAAVLFIADVDEK   VLKN  GK RL WVLE +G+SF LA  ++K T+N G +  + +  S C  W + C     +TW ++ F  P +VTV           L+A  +VS P                        W+++    +V+ V V           + VV+ R   REL     QG   F T   +R+R YL   G++V    V++T+++  L D             + A+ FLDA++ LA+ +W + G+  + G P+ DI++   +Q  + G G   G+  ++  +   +   S F   ++ +   +    W +++G+++W    G   VA+W AA+ L   + LC   W++
Sbjct:   97 DYSILAIAVSMYLLLSIAVADLCGGSALVVEGRGSGDDFVWFTGRRLFGVFLVVTFLTLIGASVRVLFFSSQDNVTLVIGAAAVLFIADVDEKAHTVLKNFSGKSRLCWVLEIIGMSFVLATFSLKATDNYGRVAGKDAYKSDCAGWGNDCG---IFTWQYIFFELPLTVTVSRPTLAMEHVLLLALCWVSMPY--------------------FFRWIILLAVAIVLFVVV-----------VAVVIARRSFRELYRAFTQGAERF-TATDKRRRFYLFWAGIVVQLLRVALTAMYFSLSDNDQLVFSESIFSAEDAISFLDALVHLAIFSWWICGMGISEG-PSRDIAIDPPLQPMLLGWGLYYGVLIVLTLVFEWIRGPSDFADAMVYIAEWSVRHCWNIMIGTWVW-RAEGKKDVAYWIAASGLVFTMGLCVAAWVD 500
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BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F1_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 7.580e-52
Identity = 131/282 (46.45%), Postives = 166/282 (58.87%), Query Frame = 3 
Query:   54 DYSIVAIAGAMYLLVTIVAADLWGGCALCLEGLGSVD-FAWCTQRRAFGACLLGTFVALIGASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVLEAVGLSFFLAVLAIKVTEN-GTIVSRYSSNS-CDEWDFCPYDTFYTWWFVLFLHPTSVTVCSLMASSFVSTPVGRGPLSCV---DRSPRGLAFGCLMLFWLVVAI----AQVVVRVTVFFAEYVALGCSIPVVLCRH-RELRTHLVQGLRTFRTTVHQRQRKYLLLGGLIV 866
            DYS++AIA +MYLL++I  ADL GGCAL +EG GS D F W T RR FG  L+ T + LIGASVRVLF+SS +N+ LVIGAAAVLFIADVDEK   VLKNV GKWRLFWVLE +G+SF LA  ++K T N G +  R    + C  W        +TW ++    P +VTVC+L+ +S VS P+   P+      DR  +   F  L L W+ +        V   V V F   VAL     V+ CR  REL     +G   F  T  +R+R YL   G++V
Sbjct:  111 DYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPIS--PIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVAL-----VIACRSFRELYRAFTRGAERFSAT-DKRRRFYLFWAGMVV 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9008.17199.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.150e-5490.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.220e-5335.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.580e-5246.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9008contigEcto-sp9_F_contig9008:2818..4604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1517
Cds size1215
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9008.17199.1prot_Ecto-sp9_F_contig9008.17199.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9008 3037..4521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.297391-UTR-Ecto-sp9_F_contig9008:2817..30361622930965.297391-UTR-Ecto-sp9_F_contig9008:2817..3036Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9008 2818..3036 -
1692278971.0326238-UTR-Ecto-sp9_F_contig9008:2817..30361692278971.0326238-UTR-Ecto-sp9_F_contig9008:2817..3036Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9008 2818..3036 -
1622930965.366389-UTR-Ecto-sp9_F_contig9008:4521..46041622930965.366389-UTR-Ecto-sp9_F_contig9008:4521..4604Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9008 4522..4604 -
1692278971.0689642-UTR-Ecto-sp9_F_contig9008:4521..46041692278971.0689642-UTR-Ecto-sp9_F_contig9008:4521..4604Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9008 4522..4604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.3246484-CDS-Ecto-sp9_F_contig9008:3036..40141622930965.3246484-CDS-Ecto-sp9_F_contig9008:3036..4014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9008 3037..4014 -
1692278971.0470996-CDS-Ecto-sp9_F_contig9008:3036..40141692278971.0470996-CDS-Ecto-sp9_F_contig9008:3036..4014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9008 3037..4014 -
1622930965.3472917-CDS-Ecto-sp9_F_contig9008:4284..45211622930965.3472917-CDS-Ecto-sp9_F_contig9008:4284..4521Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9008 4285..4521 -
1692278971.0594788-CDS-Ecto-sp9_F_contig9008:4284..45211692278971.0594788-CDS-Ecto-sp9_F_contig9008:4284..4521Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9008 4285..4521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9008.17199.1

>prot_Ecto-sp9_F_contig9008.17199.1 ID=prot_Ecto-sp9_F_contig9008.17199.1|Name=mRNA_Ecto-sp9_F_contig9008.17199.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=405bp
MYLLVTIVAADLWGGCALCLEGLGSVDFAWCTQRRAFGACLLGTFVALIG
ASVRVLFYSSFENMELVIGAAAVLFIADVDEKVMVVLKNVRGKWRLFWVL
EAVGLSFFLAVLAIKVTENGTIVSRYSSNSCDEWDFCPYDTFYTWWFVLF
LHPTSVTVCSLMASSFVSTPVGRGPLSCVDRSPRGLAFGCLMLFWLVVAI
AQVVVRVTVFFAEYVALGCSIPVVLCRHRELRTHLVQGLRTFRTTVHQRQ
RKYLLLGGLIVVSVTSLFSWLRDVGDPAVDFLDAVLFLALVTWLVSGLFA
ACGVPAADISLTTRVQWFITGCGSVGLTWMMVDMVNLLIPESPFGLLVLE
LGYLTWMLIVGSFLWGEKSGTYGVAFWAAATQLRVMITLCSQIWLEVLLS
GDVK*
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mRNA from alignment at Ecto-sp9_F_contig9008:2818..4604-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9008.17199.1 ID=mRNA_Ecto-sp9_F_contig9008.17199.1|Name=mRNA_Ecto-sp9_F_contig9008.17199.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1787bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9008:2818..4604- (Ectocarpus species9 EcSCA_722f female)
CCCAGAGCCAGACGTCTTCCATTGACGATGATTATTATGCTGATGGGAGC
CCCGATTACTCCATTGTGGCGATTGCGGGCGCCATGTACCTTCTGGTCAC
CATAGTGGCGGCAGACCTGTGGGGTGGCTGTGCGCTCTGCTTGGAAGGAC
TCGGCTCGGTGGACTTTGCTTGGTGTACCCAAAGACGGGCCTTTGGTGCG
TGTTTGCTCGGGACCTTCGTCGCTCTGATCGGGGCTTCCGTTCGGGTCCT
GTTCTACTCGTCATTCGAGAATATGGAGCTAGTTATCGGAGCTGCTGCGG
TTCTCTTCATCGCGGATGTGGTAAGCGACCTAGGCGTACCGTAGCATAAC
ACACACACGTTCGGAGAGAGCACGAACGAGTTGATTCGTTGTCAAAGCCA
CTGGTTATCCAATGAACTGCTGTTGTGTTGTTAATCTATACAACGAGAAG
AGTTGGCTCTACTTCGCCAAGCTTCTCGGTTAACTTGGGAGCCGCTTGCA
AACTTCGGCGACCTTCTGTACACCTGCTTCCTCCACAACACGCCCTTGTG
ACGACATTGAAATCTGTTCGCAACAATTGATACTTCTTAGGACGAGAAGG
TGATGGTGGTGCTGAAGAACGTGAGGGGGAAATGGCGTCTATTCTGGGTG
CTCGAGGCCGTGGGCTTGAGTTTCTTCCTTGCCGTGCTGGCGATAAAAGT
CACTGAAAACGGTACCATAGTTAGCAGATATTCATCCAATTCGTGTGATG
AGTGGGATTTCTGTCCGTACGACACTTTTTACACTTGGTGGTTCGTTCTG
TTCCTTCACCCTACCTCCGTGACGGTCTGCTCTTTGATGGCATCAAGTTT
CGTTTCCACACCTGTTGGGCGAGGACCACTGAGTTGCGTCGATCGTTCTC
CACGTGGGTTGGCGTTTGGTTGCCTTATGTTGTTTTGGTTGGTCGTAGCT
ATTGCGCAGGTTGTTGTCCGCGTGACGGTCTTCTTTGCTGAATACGTGGC
ATTAGGATGCTCCATTCCCGTCGTACTGTGCCGTCATCGGGAGCTGAGAA
CGCACCTAGTTCAGGGCTTGCGAACATTTCGCACAACGGTGCATCAACGC
CAGAGAAAGTATCTCCTGTTGGGCGGGTTAATCGTGGTTTCGGTCACCTC
TCTCTTCTCCTGGTTGCGTGATGTGGGTGATCCTGCTGTGGATTTTCTGG
ACGCAGTTTTATTCCTAGCCCTTGTGACGTGGCTTGTTTCCGGGCTGTTT
GCGGCCTGTGGAGTCCCAGCTGCTGATATTTCGCTTACGACGCGAGTGCA
ATGGTTTATCACGGGGTGTGGATCTGTTGGACTTACCTGGATGATGGTAG
ACATGGTGAATCTCCTTATACCGGAATCACCTTTCGGACTTCTTGTGCTT
GAGTTGGGATATCTTACGTGGATGCTTATCGTGGGAAGTTTTCTGTGGGG
CGAGAAGAGTGGCACGTACGGGGTGGCGTTTTGGGCCGCTGCCACACAAC
TTCGTGTGATGATTACACTCTGCAGTCAGATTTGGCTGGAAGTTTTGCTT
AGCGGCGATGTGAAGTGAGACTGTTTTTCGGACCGCGGGTCGAGCGTCTC
TATGTGAACCGTTGAACGCAGCAACATTCCAGCTTTTGATTTCTGTGTCC
CACGTTCGCGGCTGATGTGGGCATGGAGATGCAGTAAATAGTAGTCGTCG
AACATCATGGGATGGATGCGCGCGGAGGTTGTAATTGACAAAGCTGTCTG
TTACAGCAAGGGCGCACAAAAAAAACAAATTCCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9008:2818..4604-

>mRNA_Ecto-sp9_F_contig9008.17199.1 ID=mRNA_Ecto-sp9_F_contig9008.17199.1|Name=mRNA_Ecto-sp9_F_contig9008.17199.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2430bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9008:2818..4604- (Ectocarpus species9 EcSCA_722f female)
ATGTACCTTCTGGTCACCATAGTGGCGGCAGACCTGTGGGGTGGCTGTGC
GCTCTGCTTGGAAGGACTCGGCTCGGTGGACTTTGCTTGGTGTACCCAAA
GACGGGCCTTTGGTGCGTGTTTGCTCGGGACCTTCGTCGCTCTGATCGGG
GCTTCCGTTCGGGTCCTGTTCTACTCGTCATTCGAGAATATGGAGCTAGT
TATCGGAGCTGCTGCGGTTCTCTTCATCGCGGATGTGATGTACCTTCTGG
TCACCATAGTGGCGGCAGACCTGTGGGGTGGCTGTGCGCTCTGCTTGGAA
GGACTCGGCTCGGTGGACTTTGCTTGGTGTACCCAAAGACGGGCCTTTGG
TGCGTGTTTGCTCGGGACCTTCGTCGCTCTGATCGGGGCTTCCGTTCGGG
TCCTGTTCTACTCGTCATTCGAGAATATGGAGCTAGTTATCGGAGCTGCT
GCGGTTCTCTTCATCGCGGATGTGGACGAGAAGGTGATGGTGGTGCTGAA
GAACGTGAGGGGGAAATGGCGTCTATTCTGGGTGCTCGAGGCCGTGGGCT
TGAGTTTCTTCCTTGCCGTGCTGGCGATAAAAGTCACTGAAAACGGTACC
ATAGTTAGCAGATATTCATCCAATTCGTGTGATGAGTGGGATTTCTGTCC
GTACGACACTTTTTACACTTGGTGGTTCGTTCTGTTCCTTCACCCTACCT
CCGTGACGGTCTGCTCTTTGATGGCATCAAGTTTCGTTTCCACACCTGTT
GGGCGAGGACCACTGAGTTGCGTCGATCGTTCTCCACGTGGGTTGGCGTT
TGGTTGCCTTATGTTGTTTTGGTTGGTCGTAGCTATTGCGCAGGTTGTTG
TCCGCGTGACGGTCTTCTTTGCTGAATACGTGGCATTAGGATGCTCCATT
CCCGTCGTACTGTGCCGTCATCGGGAGCTGAGAACGCACCTAGTTCAGGG
CTTGCGAACATTTCGCACAACGGTGCATCAACGCCAGAGAAAGTATCTCC
TGTTGGGCGGGTTAATCGTGGTTTCGGTCACCTCTCTCTTCTCCTGGTTG
CGTGATGTGGGTGATCCTGCTGTGGATTTTCTGGACGCAGTTTTATTCCT
AGCCCTTGTGACGTGGCTTGTTTCCGGGCTGTTTGCGGCCTGTGGAGTCC
CAGCTGCTGATATTTCGCTTACGACGCGAGTGCAATGGTTTATCACGGGG
TGTGGATCTGTTGGACTTACCTGGATGATGGTAGACATGGTGAATCTCCT
TATACCGGAATCACCTTTCGGACTTCTTGTGCTTGAGTTGGGATATCTTA
CGTGGATGCTTATCGTGGGAAGTTTTCTGTGGGGCGAGAAGAGTGGCACG
TACGGGGTGGCGTTTTGGGCCGCTGCCACACAACTTCGTGTGATGATTAC
ACTCTGCAGTCAGATTTGGCTGGAAGTTTTGCTTAGCGGCGATGTGAAGT
GAGACGAGAAGGTGATGGTGGTGCTGAAGAACGTGAGGGGGAAATGGCGT
CTATTCTGGGTGCTCGAGGCCGTGGGCTTGAGTTTCTTCCTTGCCGTGCT
GGCGATAAAAGTCACTGAAAACGGTACCATAGTTAGCAGATATTCATCCA
ATTCGTGTGATGAGTGGGATTTCTGTCCGTACGACACTTTTTACACTTGG
TGGTTCGTTCTGTTCCTTCACCCTACCTCCGTGACGGTCTGCTCTTTGAT
GGCATCAAGTTTCGTTTCCACACCTGTTGGGCGAGGACCACTGAGTTGCG
TCGATCGTTCTCCACGTGGGTTGGCGTTTGGTTGCCTTATGTTGTTTTGG
TTGGTCGTAGCTATTGCGCAGGTTGTTGTCCGCGTGACGGTCTTCTTTGC
TGAATACGTGGCATTAGGATGCTCCATTCCCGTCGTACTGTGCCGTCATC
GGGAGCTGAGAACGCACCTAGTTCAGGGCTTGCGAACATTTCGCACAACG
GTGCATCAACGCCAGAGAAAGTATCTCCTGTTGGGCGGGTTAATCGTGGT
TTCGGTCACCTCTCTCTTCTCCTGGTTGCGTGATGTGGGTGATCCTGCTG
TGGATTTTCTGGACGCAGTTTTATTCCTAGCCCTTGTGACGTGGCTTGTT
TCCGGGCTGTTTGCGGCCTGTGGAGTCCCAGCTGCTGATATTTCGCTTAC
GACGCGAGTGCAATGGTTTATCACGGGGTGTGGATCTGTTGGACTTACCT
GGATGATGGTAGACATGGTGAATCTCCTTATACCGGAATCACCTTTCGGA
CTTCTTGTGCTTGAGTTGGGATATCTTACGTGGATGCTTATCGTGGGAAG
TTTTCTGTGGGGCGAGAAGAGTGGCACGTACGGGGTGGCGTTTTGGGCCG
CTGCCACACAACTTCGTGTGATGATTACACTCTGCAGTCAGATTTGGCTG
GAAGTTTTGCTTAGCGGCGATGTGAAGTGA
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