prot_Ecto-sp9_F_contig889.17067.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig889.17067.1
Unique Name	prot_Ecto-sp9_F_contig889.17067.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	181

Homology

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BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 3.950e-107
Identity = 167/180 (92.78%), Postives = 176/180 (97.78%), Query Frame = 0

Query:    1 MKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLAVFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTNVGHDNSSSSGARVRQRNPLR 180
            MKNSRTAVAGSTARL+PPEWAIFMVA++ADLVSAAGLLPVER+SLFRGLAVFLLY+EWALA A GFVLPRVVPLIAVCFLK KWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET +VGHDNSSSSGARVRQRNPLR
Sbjct:    1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180

[Close]

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 5.120e-102
Identity = 164/180 (91.11%), Postives = 169/180 (93.89%), Query Frame = 0

Query:    1 MKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLAVFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTNVGHDNSSSSGARVRQRNPLR 180
            MKNSRT VAG TARL+PPEWAIFMVAV+ADLVSAAGLLP ER+SLFRGLAVFLLYREWALAFA GFVLPRVVPLIAVCFLK KWRAF ASAQERLNAL ATANE AG+STNVP AGMGGNTSAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETT+VGH NSSSSGARVRQRNPLR
Sbjct:   78 MKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	3.950e-107	92.78	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.120e-102	91.11	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..57
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 58..80
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 81..180
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	TMHMM	TMhelix		coord: 58..80

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig889	contig	Ecto-sp9_F_contig889:20046..22248 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig889.17067.1	mRNA_Ecto-sp9_F_contig889.17067.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig889 20031..22736 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig889.17067.1 ID=prot_Ecto-sp9_F_contig889.17067.1|Name=mRNA_Ecto-sp9_F_contig889.17067.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=181bp
MKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLA
VFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAA
TANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVE
LSSWAAETTNVGHDNSSSSGARVRQRNPLR*