prot_Ecto-sp9_F_contig8880.17055.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8880.17055.1
Unique Nameprot_Ecto-sp9_F_contig8880.17055.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length174
Homology
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.470e-27
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    2 CGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFVFALFELIAFCTFAAFIYE 68
            CGLYKAATAFQYLATIV+S VLVMVVVAAF PAPVTGKLGLAVGIMLFVFA+FEL+AFCT+AA+I E
Sbjct:   52 CGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEE 118          
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.270e-20
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0
Query:    2 CGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFVFALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSPGPTLAVAVVAFIFGLVGAIVTCVLRNKATAEQDGPFR 124
            C  YK  TAFQ+ A IVIS  +V+++VAAF PAP TG+LG A G ML VF++ +L AF   AA    L     +YF          GPT+ VAV+A++FGL G     +LR  AT  QDGP R
Sbjct:   94 CDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYFQI------KAGPTIGVAVIAWVFGLAGGSAILLLRPHATPGQDGPLR 210          
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: WW (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.970e-7
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    1 MCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAP-----VTGKLGLAVGIMLFVFALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSP-GPTLAVAVVAFIFGLVGAIVTCVLRNKATAEQDGPFRACM 127
            +C LYKA TA Q++A +V+S  +V+  +A F PA          L +A G ++  FA FE++AF      I  +E  L   F++ + F  +  G T  +AVVA + G+V A+        A +  DGPF  C+
Sbjct:  126 VCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVL----IIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTF---ARSSGDGPFFKCL 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized4.470e-2788.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.270e-2047.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WW9.970e-733.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 112..173
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8880contigEcto-sp9_F_contig8880:3217..5412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8880.17055.1mRNA_Ecto-sp9_F_contig8880.17055.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8880 2506..5550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8880.17055.1 ID=prot_Ecto-sp9_F_contig8880.17055.1|Name=mRNA_Ecto-sp9_F_contig8880.17055.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=174bp
MCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFV
FALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSPGPTLAVAVVAFIF
GLVGAIVTCVLRNKATAEQDGPFRACMPNAKAGGSPSSAPPAAAGVATAS
AVPQPGAAPAGTKVSQYPAVGTV*
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