prot_Ecto-sp9_F_contig8813.16998.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig8813.16998.1
Unique Name	prot_Ecto-sp9_F_contig8813.16998.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	36

Homology

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BLAST of mRNA_Ecto-sp9_F_contig8813.16998.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.410e-9
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query:    2 MFYMDTDIMVVYDGFPKGTFHLLVVPRET 30
            +FYMD D+MV YDGFPKG FHLLVVPRET
Sbjct:   92 VFYMDEDVMVTYDGFPKGKFHLLVVPRET 120

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8813.16998.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT50_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.770e-8
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0

Query:    2 MFYMDTDIMVVYDGFPKGTFHLLVVPRET 30
            +FYMD ++MV YDGFPKG FHLLVVPRET
Sbjct:  361 VFYMDENMMVTYDGFPKGKFHLLVVPRET 389

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig8813.16998.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig8813.16998.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	6.410e-9	82.76	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	6.770e-8	79.31	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036265	HIT-like superfamily	GENE3D	3.30.428.10		coord: 1..35 e-value: 1.5E-7 score: 33.2
IPR036265	HIT-like superfamily	SUPERFAMILY	54197	HIT-like	coord: 2..32
IPR011146	HIT-like domain	PROSITE	PS51084	HIT_2	coord: 1..35 score: 8.568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig8813	contig	Ecto-sp9_F_contig8813:2595..2702 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig8813.16998.1	mRNA_Ecto-sp9_F_contig8813.16998.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig8813 2595..2702 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig8813.16998.1 ID=prot_Ecto-sp9_F_contig8813.16998.1|Name=mRNA_Ecto-sp9_F_contig8813.16998.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=36bp
MMFYMDTDIMVVYDGFPKGTFHLLVVPRETVSAHV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036265	HIT-like_sf
IPR011146	HIT-like