prot_Ecto-sp9_F_contig8787.16966.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8787.16966.1
Unique Nameprot_Ecto-sp9_F_contig8787.16966.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length294
Homology
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.050e-96
Identity = 225/294 (76.53%), Postives = 227/294 (77.21%), Query Frame = 0
Query:    1 MYVPKIHAATAAAAVLAAREGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSMKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            MYVPKIHAATAAAAVLAAREGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                         XXXXXXX         LLSMKASGQGG KGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGK+ANQ+
Sbjct:    1 MYVPKIHAATAAAAVLAAREGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFFCSSSRGNRAGFFPSLLRPTAATLAFCSSSTGWWRSLPRAPSSHRRRQGTAEAVSXXXXXXXAATGTT---LLSMKASGQGGEKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQI 291          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.170e-96
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0
Query:  145 MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGK+ANQ+
Sbjct:    1 MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQI 150          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.350e-29
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 0
Query:  161 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G        FY L+ AVAY++    +GK  N++
Sbjct:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEI 209          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 1.930e-20
Identity = 53/135 (39.26%), Postives = 80/135 (59.26%), Query Frame = 0
Query:  160 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            +R  GT+ Y+LP+LDG   G  V+  VP  G  V GV+AP +A++ ++PF  +V+FI L +  R    SR +RFN+QQA+L+DI  ++ GL       +  E +   TNF FY  V  V Y+    A+G++ +QV
Sbjct:   45 DRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFSPVTSLLPLELQIIGTNFVFYVCVFTVIYSAWSNAQGELPDQV 178          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Tic20 (family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 96.7 bits (239), Expect = 4.110e-20
Identity = 65/156 (41.67%), Postives = 93/156 (59.62%), Query Frame = 0
Query:  143 LSMKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSV-RRQDTSRFIRFNVQQAILVDILTVVLGL---LGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            ++M+  G+GGGK   + +R LGT+ YL+P+LD L  G+ VF  VP   ++V G L P L ++   PF+   +F+ L + V R Q+  RFIRFN QQAIL+DILT++  L   LG+ A  V  EG   V N  FY LV  V YA     +G+  +++
Sbjct:   77 VTMQMWGRGGGKPGPI-DRVLGTLPYLVPLLDSLVYGKYVFEKVPY-STVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFNGLGSRAPAVIVEG---VNNTVFYGLVACVIYATISNLQGEYPDKI 227          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 94.4 bits (233), Expect = 1.960e-19
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 0
Query:  161 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            R L T+ Y+LP +DG   G  V+  VP +G++  G   P +A ++++PF  LV FI + +  R  + SRF+RFN+QQA+L+DI  +V GL G        E +   TNF FY  V  V YA+   A+GK  +QV
Sbjct:   75 RVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIA-GAAFPFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGPLTKTFPVELQILGTNFIFYAWVLVVGYALFSNAQGKAPDQV 207          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CM34_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 5.910e-19
Identity = 47/130 (36.15%), Postives = 78/130 (60.00%), Query Frame = 0
Query:  160 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGK 289
            +RA+   VY+LP+LDG   G +++   P++GS  + +L P +  + NVPF  L++FI L    R++  SR++RFN+QQA+L DI  ++  + G A      E +   +NF +Y +V  V Y+  + A+GK
Sbjct:   35 DRAVSAAVYILPILDGFVFGSNIYATFPLVGSAAYKLL-PLVNTFQNVPFAGLILFIGLSTFTRKEGLSRYVRFNIQQALLTDIALIIPTVFGGAGRMFPLELQAMGSNFVWYAMVTIVCYSWVQIAQGK 163          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0B2_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-18
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 0
Query:  160 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            +RA    VYL P+ DG+  G+ +F +VP+ G+L   +L  A A +D++PF  L+ FI L    R    SRF+RFN+QQAIL+DI  ++    G     V  E +Q ++N  FY +V A+ Y+    A+GK  +QV
Sbjct:   81 DRAFAAAVYLFPITDGIFFGKFLFTSVPVFGALCLPILQ-ASAAFDSIPFSGLIFFIGLSSMSRNPGLSRFLRFNLQQAILLDIAFIIPNFFGGVGQMVPIEVQQVLSNTVFYSMVLAIGYSWFSIAQGKTPDQV 214          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 2.590e-18
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  160 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            +R  GT+ YLLP LDG   G  ++  VP       G +AP +A++ ++PF  LV+FI L    R    SR +RFN+QQA+L+DI  ++ GL     G +  E +   TN  FY  +  V YA    A+GK+ +QV
Sbjct:   56 DRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAA-GAVAPFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFSPVTGLLPAELQIIGTNLVFYVCLFTVLYATWCNAQGKLPDQV 189          
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Match: Tic20 (family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 1.950e-17
Identity = 49/137 (35.77%), Postives = 78/137 (56.93%), Query Frame = 0
Query:  159 RNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFI-ILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV 294
            ++R    + Y LP+LD L  G  +F   P+   LV   LAP  AI+  +PF+ L +F  +  + VR  + +RFIR+N QQAI++D++ ++  L G AA  +     +   N  FY ++ AV YAV E  RG++ N++
Sbjct:   55 KDRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFGGAAAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNKI 191          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8787.16966.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.050e-9676.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.170e-9698.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.350e-2944.78protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.930e-2039.26protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
Tic204.110e-2041.67family protein Ycf60 n=2 Tax=Porphyridium purpureu... [more]
Hypothetical1.960e-1940.30protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
Hypothetical5.910e-1936.15protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
Hypothetical1.180e-1839.26protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical2.590e-1838.52protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
Tic201.950e-1735.77family protein Ycf60 n=2 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 161..249
e-value: 7.8E-11
score: 42.1
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 87..291
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 87..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 219..238
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 265..283
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 284..294
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..195
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 196..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..259
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 260..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableTMHMMTMhelixcoord: 238..260
NoneNo IPR availableTMHMMTMhelixcoord: 196..218
NoneNo IPR availableTMHMMTMhelixcoord: 265..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8787contigEcto-sp9_F_contig8787:81..3646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8787.16966.1mRNA_Ecto-sp9_F_contig8787.16966.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8787 81..3646 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8787.16966.1 ID=prot_Ecto-sp9_F_contig8787.16966.1|Name=mRNA_Ecto-sp9_F_contig8787.16966.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=294bp
MYVPKIHAATAAAAVLAAREGQARAFHVNNNNNNASSSSRLLLRGVPRAS
AAVHSSSSSDRMTVATAAAALPYCCSSSRGNRAGFFSSLLRPTAATLAFC
SSSTEWWRSLPRASSSHRRRQGAAEAVSRRRRGTAAATATTLLSMKASGQ
GGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPA
LAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGL
LGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKVANQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20