prot_Ecto-sp9_F_contig8786.16964.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8786.16964.1
Unique Nameprot_Ecto-sp9_F_contig8786.16964.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length279
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8786.16964.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 6.240e-98
Identity = 223/294 (75.85%), Postives = 230/294 (78.23%), Query Frame = 0 
Query:    1 GDADDVA-----LVWPWSSGDAAHHGAGGASAVAGPRGGIGGGDRSHGRXXXXXXXXXXXXXXXXXXXXXXXTFQGRTTRRGSSAGASSLAFSASASLSEGSEKPVGSDDTPSTDSLRGLYVKSRSDPEGLAHSNKRGFGGS------GG---GREPAIVKLFSRSISGKSEAVPPAVLAXXXXXXXXRKESSHSTAAAWTGQFAGAASRAGQTHSHVNRLYRGGPGNWSRGGVPRVEIVENSPAAAPARPGDAAVDSATDPHRPQQAAATAA-GATDPQSGASVVPERDMTAQ 279
            GDADDVA     LV PWS GDAA HGAGGASAVAGP GGIGGGDRSH R  XXXXXXXXXXXXXXXXXXXXX                 LA S+SASLSEGSEKPVGSDDTPSTDSLRGLYVKSRSDP GLA SNKRGFGGS      GG   GREPAIV+LF RSIS KSEAVPPAVLA        RKESSHSTAAAWTGQFAGAASRAGQT+S+ NRLYRGG GNWS GGVPRVE VE+SPAAAPARPGD AVDSAT+PHRPQQA      GATDPQS ASVV ERD+TAQ
Sbjct:  594 GDADDVAVSPGPLVRPWSGGDAARHGAGGASAVAGPCGGIGGGDRSHSREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LACSSSASLSEGSEKPVGSDDTPSTDSLRGLYVKSRSDPAGLARSNKRGFGGSDCYRESGGXXXGREPAIVELFGRSISDKSEAVPPAVLAAVEDDAATRKESSHSTAAAWTGQFAGAASRAGQTNSNANRLYRGGTGNWSSGGVPRVEFVEDSPAAAPARPGDPAVDSATNPHRPQQAXXXXXXGATDPQSEASVVLERDVTAQ 886
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BLAST of mRNA_Ecto-sp9_F_contig8786.16964.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.730e-61
Identity = 130/201 (64.68%), Postives = 137/201 (68.16%), Query Frame = 0 
Query:   79 SAGASSLAFSASASLSEGSEKPVGSDDTPSTDSLRGLYVKSRSDPEGLAHSNKRGFGGSGGGREPAIVKLFSRSISGKSEAVPPAVLAXXXXXXXXRKESSHSTAAAWTGQFAGAASRAGQTHSHVNRLYRGGPGNWSRGGVPRVEIVENSPAAAPARPGDAAVDSATDPHRPQQAAATAAGATDPQSGASVVPERDMTAQ 279
            S+ AS    +A+A   EGSEKPVGSDDTPS DSLRGLYVKSRSDPEGLAHSNKRGFGGSGGGREP  VKL  RS                           HSTAAAWTGQF GAASRAGQTHS+VNRLYRGG GNWS  GVPR  IVE+SPAAAPARPGDAAVDSATD                 QS ASVVP+RD+TAQ
Sbjct:  181 SSSASPHTAAAAAMRGEGSEKPVGSDDTPSIDSLRGLYVKSRSDPEGLAHSNKRGFGGSGGGREPGTVKLLGRS---------------------------HSTAAAWTGQFTGAASRAGQTHSNVNRLYRGGTGNWSSEGVPRDGIVEDSPAAAPARPGDAAVDSATDXXXXXXXXXXXXXXX--QSEASVVPKRDVTAQ 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8786.16964.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RGS6.240e-9875.85domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS2.730e-6164.68domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8786contigEcto-sp9_F_contig8786:824..1660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8786.16964.1mRNA_Ecto-sp9_F_contig8786.16964.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8786 824..1661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8786.16964.1 ID=prot_Ecto-sp9_F_contig8786.16964.1|Name=mRNA_Ecto-sp9_F_contig8786.16964.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=279bp
GDADDVALVWPWSSGDAAHHGAGGASAVAGPRGGIGGGDRSHGREGGGHS
GGGGGGSSSGKLLAAAATFQGRTTRRGSSAGASSLAFSASASLSEGSEKP
VGSDDTPSTDSLRGLYVKSRSDPEGLAHSNKRGFGGSGGGREPAIVKLFS
RSISGKSEAVPPAVLAAAEDDAATRKESSHSTAAAWTGQFAGAASRAGQT
HSHVNRLYRGGPGNWSRGGVPRVEIVENSPAAAPARPGDAAVDSATDPHR
PQQAAATAAGATDPQSGASVVPERDMTAQ
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