prot_Ecto-sp9_F_contig8776.16953.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8776.16953.1
Unique Nameprot_Ecto-sp9_F_contig8776.16953.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length49
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8776.16953.1 vs.
Match: COX (assembly mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC11_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.050e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:    1 MLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKSP 48
            MLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKSP
Sbjct:   51 MLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKSP 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8776.16953.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
COX2.050e-25100.00assembly mitochondrial protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePFAMPF08583Cmc1coord: 3..33
e-value: 5.8E-7
score: 29.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8776contigEcto-sp9_F_contig8776:4594..5139 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8776.16953.1mRNA_Ecto-sp9_F_contig8776.16953.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8776 3560..5250 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8776.16953.1 ID=prot_Ecto-sp9_F_contig8776.16953.1|Name=mRNA_Ecto-sp9_F_contig8776.16953.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=49bp
MLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like