prot_Ecto-sp9_F_contig8752.16933.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8752.16933.1
Unique Nameprot_Ecto-sp9_F_contig8752.16933.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length255
Homology
BLAST of mRNA_Ecto-sp9_F_contig8752.16933.1 vs.
Match: EsV-1-4 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ5_ESV1K)

HSP 1 Score: 350 bits (898), Expect = 3.810e-119
Identity = 188/255 (73.73%), Postives = 207/255 (81.18%), Query Frame = 0
Query:    1 MDTLTARLMARSGLSNAGRPPAHSTPMVTAGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALESVQAGGRSAPLYAAMAKLEVAERDYFARRYFGGEKAILKGWNCLKFKKKIKDLIKTATEKLIAITVPGTRNARPGYDNGARQAILEARAASKELKRMNEKWY-TTAGVRQQTKPTTFGVNLTQIELAIGRINNTHLGRVLALPDSDPKKQASVTSIKDSLRHAKICQRLALLVENNQCDLPDDV 254
            MD LTARLM+RSGLS AGRPPAHSTPM  AGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVAL+SVQ GG +APLYAAMAKLEVAERDYFARRYF G+KAILKGWN  KFK+KI++LI TA  KL AITVPGT N +PGY   AR A + A  AS  L  MN+KWY +  G R  TKP+TF  +LT +E AI  I N HL  VL LPDSD  KQAS+TSIK SLRHA+ICQRLA LVE+++CDLPDDV
Sbjct:   25 MDPLTARLMSRSGLSAAGRPPAHSTPMAKAGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALKSVQNGGPTAPLYAAMAKLEVAERDYFARRYFDGDKAILKGWNAEKFKQKIEELINTAANKLTAITVPGTTNTQPGYHISARGAAISAANASSRLNNMNDKWYFSIGGNRLPTKPSTFSTDLTALERAIKTIKN-HLRVVLTLPDSDTTKQASLTSIKASLRHAEICQRLARLVEDDRCDLPDDV 278          
BLAST of mRNA_Ecto-sp9_F_contig8752.16933.1 vs.
Match: EsV-1-3 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ6_ESV1K)

HSP 1 Score: 152 bits (383), Expect = 8.230e-42
Identity = 108/250 (43.20%), Postives = 134/250 (53.60%), Query Frame = 0
Query:    1 MDTLTARLMARSGLSNAGRPPAHSTPMVTAGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALESVQAGGRSA---PLYAAMAKLEVAERDYFARRYFG-GEKAILKGWNCLKFKKKIKDLIKTATEKLIAITVPGTRNARPGYDNGARQAILEARAASKELKRMNEKWYTTAGVRQQTKPTT-FGVNLTQIELAIGRINNTHLGRVLALPDSDPKKQASVTSIKDSLRHAKICQRLALLVEN 245
            MD LTARLM+RSGLS AGRPPAHSTPM+ AGIGLNPSKPLLPPVHNLRMIYLKEP  DAE  LH ARVAL+ ++          LY AMAKL+  E  YFA RY G G+  IL+GW    F  K+ +L+  +  +                   A  A      A+++L+ M+     T  ++   +P   F    T IE  I  I    L +              + S+ DSL+ AK   RLA LV+N
Sbjct:    1 MDPLTARLMSRSGLSAAGRPPAHSTPMIKAGIGLNPSKPLLPPVHNLRMIYLKEPLTDAEKDLHAARVALKLLETADNDVNRKALYKAMAKLQGKEAQYFATRYIGRGKPQILRGWKTHYFSVKVGELLHKSVMR------------HTSTHQDAIDAADGTYYAAEDLRDMD-----TEALKPNPQPKAWFDAGRTDIETQIASIEGVILNKTTM-------DVHDIASLNDSLQDAKNILRLAKLVDN 226          
BLAST of mRNA_Ecto-sp9_F_contig8752.16933.1 vs.
Match: EsV-1-18 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP3_ESV1K)

HSP 1 Score: 139 bits (351), Expect = 5.970e-37
Identity = 110/276 (39.86%), Postives = 143/276 (51.81%), Query Frame = 0
Query:    1 MDTLTARLMARSGLSNAGRPPAHSTPMVTAGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALESVQAGGRSAP------------LYAAMAKLEVAERDYFARRYFGGEKAILKGWNCLK----FKKKIKDLIKTATEKLIAITVPGTRNARPGYDN--GARQAILEARAASKELKRMNEKWYTTAGV----RQQTKPTTFGVNLTQIELAIGRINNTHLGRVLALPDSDPKKQASVTSIKDSLRHAKICQRLALLVENNQCDLPDDV 254
            MD+LTARLM+R+                    GLNP  P LPPVHN+RM+YLKE FG AE  LHDAR+ALE ++    + P            LY AMAKL V ERDYFA RYFG +KA+LKGWN  +    F K I DL   A+ +L           RP   +    + A +    A   L++MN  WY+  GV     + T    FG     I   +G+I  T+L  ++A        Q  + +IK  LR A+ICQRLA LV +++ DLPDD+
Sbjct:    1 MDSLTARLMSRA--------------------GLNPVDPKLPPVHNMRMVYLKEQFGAAEEALHDARLALEDLRDVQETKPYDQTKVDAAANLLYDAMAKLAVKERDYFASRYFGRDKAVLKGWNVDRKQELFAKFIDDLRNKASGRL-----------RPNMFSHMDVQNAAVYCSQACVALEQMNNLWYS-GGVAIPSNRLTDTPDFGKRQRVINQRLGQIQ-TNLRSIMA-----SGTQRDIITIKSCLRDAEICQRLARLVASDRWDLPDDL 238          
BLAST of mRNA_Ecto-sp9_F_contig8752.16933.1 vs.
Match: EsV-1-5 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ4_ESV1K)

HSP 1 Score: 84.3 bits (207), Expect = 1.810e-15
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   25 TPMVTAGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALESVQ---AGGRSAPLYAAMAKLEVAERDYFARRYFGGEKAILKGWN 113
            T  + + IG+NP+  LLPPVHN+ MI L+E   DAE  LH ARVAL++++   A G ++ LY AM KL+  E+ YFARRY    KA+L+GW+
Sbjct:    3 TKNIWSQIGINPANTLLPPVHNVGMIILREELTDAENDLHAARVALKTLEEAGASGDTSDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWH 94          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8752.16933.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
EsV-1-43.810e-11973.73n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-38.230e-4243.20n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-185.970e-3739.86n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
EsV-1-51.810e-1550.00n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8752contigEcto-sp9_F_contig8752:2440..3204 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8752.16933.1mRNA_Ecto-sp9_F_contig8752.16933.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8752 2440..3222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8752.16933.1 ID=prot_Ecto-sp9_F_contig8752.16933.1|Name=mRNA_Ecto-sp9_F_contig8752.16933.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=255bp
MDTLTARLMARSGLSNAGRPPAHSTPMVTAGIGLNPSKPLLPPVHNLRMI
YLKEPFGDAEIHLHDARVALESVQAGGRSAPLYAAMAKLEVAERDYFARR
YFGGEKAILKGWNCLKFKKKIKDLIKTATEKLIAITVPGTRNARPGYDNG
ARQAILEARAASKELKRMNEKWYTTAGVRQQTKPTTFGVNLTQIELAIGR
INNTHLGRVLALPDSDPKKQASVTSIKDSLRHAKICQRLALLVENNQCDL
PDDV*
back to top