prot_Ecto-sp9_F_contig8718.16900.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8718.16900.1
Unique Nameprot_Ecto-sp9_F_contig8718.16900.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length134
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8718.16900.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.020e-30
Identity = 70/115 (60.87%), Postives = 71/115 (61.74%), Query Frame = 0 
Query:   20 MYSLFSERQSLLSPTAGDEAPPPTFRRRLYDLLEANTKMGMLLEAVIVLLIVVNVVCFMLSTERSLEDNTTASLIFDSVEVCTVALFTTEYILRFYSIVEAIDSSGRPLYSGMKG 134
            MYSLFSER+SLLSPTAGDEAPPPTFRRRLYDLLEANTK                                          VCTVALFTTEYILRFYSIVEA DSSGR LYSGMKG
Sbjct:    1 MYSLFSERESLLSPTAGDEAPPPTFRRRLYDLLEANTK------------------------------------------VCTVALFTTEYILRFYSIVEATDSSGRALYSGMKG 73
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8718.16900.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DVH9_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 2.310e-5
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 0 
Query:   36 GDEAPPPTFRRRLYDLLEAN-----------------------TKMGMLLEAVIVLLIVVNVVCFMLSTERSL-EDNTTASLIFDSVEVCTVALFTTEYILRFYSIVEAIDSSGRP 127
            G+ AP   FRR+LYD +E N                        + G++ E +++++I++NV  F+LST+  L  D      IF  VE+ TV+LF+TEY++R Y +    D+   P
Sbjct:   46 GNSAP---FRRKLYDFMEPNEAPTRQERADREASVIVFQYSAWARAGLIFEKMMLMVILINVGAFVLSTDEELMHDAPFLVSIFSWVELVTVSLFSTEYLVRLYCVTGVHDAYSDP 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8718.16900.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.020e-3060.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88... [more]
Hypothetical2.310e-531.90protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027359Voltage-dependent channel domain superfamilyGENE3D1.20.120.350coord: 36..127
e-value: 1.6E-10
score: 42.6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..79
NoneNo IPR availableTMHMMTMhelixcoord: 58..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8718contigEcto-sp9_F_contig8718:386..4789 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8718.16900.1mRNA_Ecto-sp9_F_contig8718.16900.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8718 386..4790 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8718.16900.1 ID=prot_Ecto-sp9_F_contig8718.16900.1|Name=mRNA_Ecto-sp9_F_contig8718.16900.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp
LLLLHEGVGAPGLSTRAAAMYSLFSERQSLLSPTAGDEAPPPTFRRRLYD
LLEANTKMGMLLEAVIVLLIVVNVVCFMLSTERSLEDNTTASLIFDSVEV
CTVALFTTEYILRFYSIVEAIDSSGRPLYSGMKG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027359Volt_channel_dom_sf