prot_Ecto-sp9_F_contig11733.1445.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig11733.1445.1
Unique Name	prot_Ecto-sp9_F_contig11733.1445.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	157

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Match: F-box (domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 9.860e-98
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 155
            ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYL+GMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC
Sbjct:  446 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 600

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.750e-92
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 0

Query:    1 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 155
            ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYL+GMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPV MAIAVAVRRMQRGEPVEA LVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTL+AAEVFTPLIVWC
Sbjct: 1077 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVGMAIAVAVRRMQRGEPVEATLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLSAAEVFTPLIVWC 1231

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
F-box	9.860e-98	99.35	domain-containing protein (Fragment) n=1 Tax=Ectoc...	[more]
F-box	1.750e-92	97.42	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 136..156
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..91
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 111..135
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..67
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 92..110
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..29
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..21 score: 0.587
None	No IPR available	TMHMM	TMhelix		coord: 34..56
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 110..132
None	No IPR available	TMHMM	TMhelix		coord: 68..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11733	contig	Ecto-sp9_F_contig11733:2117..3571 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11733.1445.1	mRNA_Ecto-sp9_F_contig11733.1445.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig11733 2117..3571 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig11733.1445.1 ID=prot_Ecto-sp9_F_contig11733.1445.1|Name=mRNA_Ecto-sp9_F_contig11733.1445.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=157bp
ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVL
CLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGE
PVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTP
LIVWCW*