mRNA_Ecto-sp9_F_contig11733.1445.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11733.1445.1
Unique NamemRNA_Ecto-sp9_F_contig11733.1445.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Match: F-box (domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 9.860e-98
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 465
            ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYL+GMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC
Sbjct:  446 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 600
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BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.750e-92
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1 
Query:    1 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 465
            ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYL+GMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPV MAIAVAVRRMQRGEPVEA LVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTL+AAEVFTPLIVWC
Sbjct: 1077 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVGMAIAVAVRRMQRGEPVEATLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLSAAEVFTPLIVWC 1231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11733.1445.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F-box9.860e-9899.35domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
F-box1.750e-9297.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11733contigEcto-sp9_F_contig11733:2117..3571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-10_002720.1
Hectar predicted targeting categorysignal peptide
Exons3
Model size471
Cds size471
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11733.1445.1prot_Ecto-sp9_F_contig11733.1445.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11733 2117..3571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928432.4343038-CDS-Ecto-sp9_F_contig11733:2116..22891622928432.4343038-CDS-Ecto-sp9_F_contig11733:2116..2289Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 2117..2289 +
1692277869.1438615-CDS-Ecto-sp9_F_contig11733:2116..22891692277869.1438615-CDS-Ecto-sp9_F_contig11733:2116..2289Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 2117..2289 +
1622928432.4466631-CDS-Ecto-sp9_F_contig11733:3040..31851622928432.4466631-CDS-Ecto-sp9_F_contig11733:3040..3185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 3041..3185 +
1692277869.1518583-CDS-Ecto-sp9_F_contig11733:3040..31851692277869.1518583-CDS-Ecto-sp9_F_contig11733:3040..3185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 3041..3185 +
1622928432.4595513-CDS-Ecto-sp9_F_contig11733:3418..35711622928432.4595513-CDS-Ecto-sp9_F_contig11733:3418..3571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 3419..3571 +
1692277869.1591008-CDS-Ecto-sp9_F_contig11733:3418..35711692277869.1591008-CDS-Ecto-sp9_F_contig11733:3418..3571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11733 3419..3571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11733.1445.1

>prot_Ecto-sp9_F_contig11733.1445.1 ID=prot_Ecto-sp9_F_contig11733.1445.1|Name=mRNA_Ecto-sp9_F_contig11733.1445.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=157bp
ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLVGMLLGWIPAVL
CLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGE
PVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTP
LIVWCW*
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mRNA from alignment at Ecto-sp9_F_contig11733:2117..3571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11733.1445.1 ID=mRNA_Ecto-sp9_F_contig11733.1445.1|Name=mRNA_Ecto-sp9_F_contig11733.1445.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11733:2117..3571+ (Ectocarpus species9 EcSCA_722f female)
ATCACCCACGCCAACTGGTTTGCAGTGTTCACCCCCCTCTTCTTCTGCTT
CCTCATCCTGTGCCTGTCTCCGTGCCTCCAGTGGGCGTCGTGGGGGGACG
GCGGAGTGTACCTCGTGGGGATGCTGCTCGGCTGGATACCGGCGGTTCTC
TGCTTGGTGCTTGTGTGCTCAAGGTGCGTGTGCGTGTGCGCGTGCGCGCG
GGTGTGTGTTTGTTTTTTTATTTATTGGCATGGACCGCGCTACGGTTGTA
ACCGGTTGACCAGTGGGAATACGCCAGTTTCAGTGCGGTTGAAAATAGAA
GAAAAAAAAAATCTTCTAAAGGCTACCATGATCTGAGACCCCGGCGGGAG
GGGACGTCAGGCGGGAGGCTGAGCTGCTCTCCGGATTAACGGCGGAAAAC
GGCAGCAACACACAAGAAAAATTGTGTCTGTTCCTTGTCTGTTACCTGAC
ATCGACCGCGCTACAAACAACCAGAGGACCGAGCACCAGACGGTAGTGGG
TCTATATAGCGGAACGAAGAATAATGCGAAAACGCGTTCCTCTTCGTATG
TTAGTCCAACGCGAACGCGCGTTCTAGTCCCCGGGCCCCCTCCCCCCTAA
AGACGAGGGGGTATCATGTGTGACATCGAGGCGTGCTTGCGCGGGTATGT
GTTTTGGGTTGCGCTGCCAGCGGTCGCTTTGGAATGCTTGGTACTCACCT
GGCCAACGCGCAGACAGCCTCGCACAACTATTTACAGCGGTACCGCCAGT
ACCCGCCTGTAAACAAGCGGACCGCGATGTCTCTGCATGTTTTTGGGTGC
CACATGCAAAAATGAAAAAAAAAAGGAGCTTTCCCAACAATGAGCAAGCT
TTTTGCACTACCAATGAAAATAGACACGTGCAATCTCATCTGCGCCGAAC
CCGAACCCAACCAAATCCTGGCAGGCTTCAGGGAGACAACGTTTCGATGA
ACGTCATCATGTCCCCGCTGTGGGCGGTCGACCTCGTCCTCATCCTCGCC
CCCGTGGCCATGGCCATCGCCGTGGCTGTGCGAAGGATGCAGCGCGGAGA
GCCCGTGGAGGCGATGCTGGTGAGCACAACAGCAGTAGCGTAAGCGTAAC
ATCAAAGGGAGGTTGACCGTTGGAGACAGCAGCACCCCGTTCGACGGGAT
TCGTCGGAATTCTTTCTACGGCGCGAGAGTTTAGGGAAGGCTGCGGGATT
GTAGCTGTTTCGACCCCTTTTGCGCCCCGCCGCACCTCCCCGACATGCAC
CTAACGAAAAAAGCACCCATCCATATCCCATCCATCTATTGCGCGTATCT
AGGTCCACACCCTGGCCGCGTCCTGGTGCCTGCTGACGCCGGTGCTGGCG
CCCGTGGTGGCCTTCGAGATCGCGCTGGCGGTGTACGTGGAGGGGGAGCG
CGACACCCTCACAGCCGCGGAGGTGTTCACCCCTCTCATCGTCTGGTGCT
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11733:2117..3571+

>mRNA_Ecto-sp9_F_contig11733.1445.1 ID=mRNA_Ecto-sp9_F_contig11733.1445.1|Name=mRNA_Ecto-sp9_F_contig11733.1445.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11733:2117..3571+ (Ectocarpus species9 EcSCA_722f female)
ATCACCCACGCCAACTGGTTTGCAGTGTTCACCCCCCTCTTCTTCTGCTT
CCTCATCCTGTGCCTGTCTCCGTGCCTCCAGTGGGCGTCGTGGGGGGACG
GCGGAGTGTACCTCGTGGGGATGCTGCTCGGCTGGATACCGGCGGTTCTC
TGCTTGGTGCTTGTGTGCTCAAGATCACCCACGCCAACTGGTTTGCAGTG
TTCACCCCCCTCTTCTTCTGCTTCCTCATCCTGTGCCTGTCTCCGTGCCT
CCAGTGGGCGTCGTGGGGGGACGGCGGAGTGTACCTCGTGGGGATGCTGC
TCGGCTGGATACCGGCGGTTCTCTGCTTGGTGCTTGTGTGCTCAAGGCTT
CAGGGAGACAACGTTTCGATGAACGTCATCATGTCCCCGCTGTGGGCGGT
CGACCTCGTCCTCATCCTCGCCCCCGTGGCCATGGCCATCGCCGTGGCTG
TGCGAAGGATGCAGCGCGGAGAGCCCGTGGAGGCGATGCTGGCTTCAGGG
AGACAACGTTTCGATGAACGTCATCATGTCCCCGCTGTGGGCGGTCGACC
TCGTCCTCATCCTCGCCCCCGTGGCCATGGCCATCGCCGTGGCTGTGCGA
AGGATGCAGCGCGGAGAGCCCGTGGAGGCGATGCTGGTCCACACCCTGGC
CGCGTCCTGGTGCCTGCTGACGCCGGTGCTGGCGCCCGTGGTGGCCTTCG
AGATCGCGCTGGCGGTGTACGTGGAGGGGGAGCGCGACACCCTCACAGCC
GCGGAGGTGTTCACCCCTCTCATCGTCTGGTGCTGGTGAGTCCACACCCT
GGCCGCGTCCTGGTGCCTGCTGACGCCGGTGCTGGCGCCCGTGGTGGCCT
TCGAGATCGCGCTGGCGGTGTACGTGGAGGGGGAGCGCGACACCCTCACA
GCCGCGGAGGTGTTCACCCCTCTCATCGTCTGGTGCTGGTGA
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