prot_Ecto-sp9_F_contig11697.1405.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11697.1405.1
Unique Nameprot_Ecto-sp9_F_contig11697.1405.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length85
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.750e-52
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0 
Query:    3 EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 85
            EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCE+CRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
Sbjct:  255 EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCENCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 337
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Similar (to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.840e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    4 GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 85
            GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
Sbjct:  304 GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 385
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B4P7_9EUPU)

HSP 1 Score: 50.1 bits (118), Expect = 3.820e-5
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:   14 CESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGM 55
            C++ GML+ CD C  A HL+CA PP+ +VP   ++C+ C G+
Sbjct:   66 CKTPGMLICCDCCPRAYHLQCAKPPLKKVPRGKWMCQVCMGI 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.750e-5298.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar7.840e-52100.00to chromodomain helicase DNA binding protein 4 iso... [more]
Uncharacterized3.820e-545.24protein (Fragment) n=1 Tax=Arion vulgaris TaxID=10... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 8..53
e-value: 8.1E-4
score: 28.7
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 14..53
e-value: 5.1E-7
score: 29.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..54
e-value: 5.5E-10
score: 41.0
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 9..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11697contigEcto-sp9_F_contig11697:2634..3726 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11697.1405.1mRNA_Ecto-sp9_F_contig11697.1405.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11697 2634..3728 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11697.1405.1 ID=prot_Ecto-sp9_F_contig11697.1405.1|Name=mRNA_Ecto-sp9_F_contig11697.1405.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
EEEGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCE
SCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD