mRNA_Ecto-sp9_F_contig11697.1405.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11697.1405.1
Unique NamemRNA_Ecto-sp9_F_contig11697.1405.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.750e-52
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    7 EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 255
            EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCE+CRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
Sbjct:  255 EGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCENCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 337
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Similar (to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.840e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   10 GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 255
            GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
Sbjct:  304 GNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD 385
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BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B4P7_9EUPU)

HSP 1 Score: 50.1 bits (118), Expect = 3.820e-5
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   40 CESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCESCRGM 165
            C++ GML+ CD C  A HL+CA PP+ +VP   ++C+ C G+
Sbjct:   66 CKTPGMLICCDCCPRAYHLQCAKPPLKKVPRGKWMCQVCMGI 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11697.1405.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.750e-5298.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar7.840e-52100.00to chromodomain helicase DNA binding protein 4 iso... [more]
Uncharacterized3.820e-545.24protein (Fragment) n=1 Tax=Arion vulgaris TaxID=10... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11697contigEcto-sp9_F_contig11697:2634..3728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog2880.D7G7A4
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.647891-CDS-Ecto-sp9_F_contig11697:2633..27551622928426.647891-CDS-Ecto-sp9_F_contig11697:2633..2755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11697 2634..2755 +
1692277867.1796103-CDS-Ecto-sp9_F_contig11697:2633..27551692277867.1796103-CDS-Ecto-sp9_F_contig11697:2633..2755Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11697 2634..2755 +
1622928426.665247-CDS-Ecto-sp9_F_contig11697:3593..37261622928426.665247-CDS-Ecto-sp9_F_contig11697:3593..3726Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11697 3594..3726 +
1692277867.1939354-CDS-Ecto-sp9_F_contig11697:3593..37261692277867.1939354-CDS-Ecto-sp9_F_contig11697:3593..3726Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11697 3594..3726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11697.1405.1prot_Ecto-sp9_F_contig11697.1405.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11697 2634..3726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11697.1405.1

>prot_Ecto-sp9_F_contig11697.1405.1 ID=prot_Ecto-sp9_F_contig11697.1405.1|Name=mRNA_Ecto-sp9_F_contig11697.1405.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
EEEGNEADCVKPGCESDGMLVVCDHCVGAVHLECADPPMIQVPAEFYLCE
SCRGMCSICLDTAKRDDTDVRCFQCYRLFHSSCLD
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mRNA from alignment at Ecto-sp9_F_contig11697:2634..3728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11697.1405.1 ID=mRNA_Ecto-sp9_F_contig11697.1405.1|Name=mRNA_Ecto-sp9_F_contig11697.1405.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1095bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11697:2634..3728+ (Ectocarpus species9 EcSCA_722f female)
GAGGAAGAAGGGAACGAGGCGGACTGCGTCAAGCCAGGGTGCGAGTCGGA
CGGGATGCTCGTGGTGTGCGACCACTGCGTGGGGGCGGTGCACCTGGAGT
GCGCGGACCCGCCGATGATCCAGTAAGTGGCAATTTGATCTCTTCTTGTG
TGTTGTTGGCAACGCATTTGTTTTTTTCTGTGCGTCGCTAGATTGGTTTT
TGTGTCCGGCCATGATTCAGTAAGGGCCAATTGATCTCTGTTGTTGGCTG
TTCATTTTTTTTTTCTGTGAGGTGCTTGATTTTTTTTTTCTTGTCCCATG
ATCCAGGAAGTGTTCAAGACGTGTCGTTTGATCCGCATTTGGTCAACAGT
TTCGTGTGCGTTGTTGGTGTGTTTTTCTAGATTGGGAGTGCAAGTTTTGT
GGTCTTGAGTGCATTACGCGTGTGGGCAGTCAAGTAGTGCTGCTGGGATA
TGTGTAAGTGTCATGTCAGCTAGCGTTCTTTGGTATGTTCGTCAATATGG
TTGTCGTCGCGTTGTTCCGTGTGTGTGTTTTTGTTATTAGCATCGACCGC
GCTAACCGGCTGACCAATGAAAAGACCGTGTGCGTGTGTCATTTTTTTAT
TACGGGTGTGGGGGTCTCTAGTCGTTTGTTGGTCATTTGTTGGTCGGTAC
GGCTTGGCCCGGCTTCAGAAAATCGCAAGTGCGGCGGGTGGTCGCGGTGC
CGTACGAAACCCTCCACGACCGGGGAGAGCAGGAGCATCATCGACGCTGG
ACGGGGAAGGAGACAGTTGTTACCACGCCACCCCTTTTTATTTTGGCTCC
TGTGTGCCACGCTAGTGCGGCCCGTTCGTGTCCTATTTTTTTTTTGCTTT
TTTTCGTTTTTTTGAGCCGAAGTTTTTTGCGGCGATCCTGTTGTCGGAAA
GCGCTCCAAAGAAACACCACGTCTCAGAGACCGACGACACATGCCGAAAC
GACGATGCAGGGTACCGGCGGAGTTCTACCTGTGCGAGAGCTGCCGGGGC
ATGTGCTCCATCTGCCTGGACACGGCCAAGAGAGACGACACGGACGTTCG
CTGCTTCCAGTGCTACCGCCTCTTCCACTCCTCTTGCCTCGACAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11697:2634..3728+

>mRNA_Ecto-sp9_F_contig11697.1405.1 ID=mRNA_Ecto-sp9_F_contig11697.1405.1|Name=mRNA_Ecto-sp9_F_contig11697.1405.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11697:2634..3728+ (Ectocarpus species9 EcSCA_722f female)
GAGGAAGAAGGGAACGAGGCGGACTGCGTCAAGCCAGGGTGCGAGTCGGA
CGGGATGCTCGTGGTGTGCGACCACTGCGTGGGGGCGGTGCACCTGGAGT
GCGCGGACCCGCCGATGATCCAGAGGAAGAAGGGAACGAGGCGGACTGCG
TCAAGCCAGGGTGCGAGTCGGACGGGATGCTCGTGGTGTGCGACCACTGC
GTGGGGGCGGTGCACCTGGAGTGCGCGGACCCGCCGATGATCCAGGTACC
GGCGGAGTTCTACCTGTGCGAGAGCTGCCGGGGCATGTGCTCCATCTGCC
TGGACACGGCCAAGAGAGACGACACGGACGTTCGCTGCTTCCAGTGCTAC
CGCCTCTTCCACTCCTCTTGCCTCGACGGTACCGGCGGAGTTCTACCTGT
GCGAGAGCTGCCGGGGCATGTGCTCCATCTGCCTGGACACGGCCAAGAGA
GACGACACGGACGTTCGCTGCTTCCAGTGCTACCGCCTCTTCCACTCCTC
TTGCCTCGAC
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