prot_Ecto-sp9_F_contig11322.1140.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11322.1140.1
Unique Nameprot_Ecto-sp9_F_contig11322.1140.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length319
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.820e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:  251 MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 317
            MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN
Sbjct:    1 MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 67
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Match: polysaccharide (lyase family 7 protein n=1 Tax=Micromonospora sp. HNM0581 TaxID=2716341 RepID=UPI00146F3243)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-7
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 0 
Query:  201 LPSYIQASTTTQGEHPASSLVDGDLNNEWSAQGAGAWFSVELPEAVVLSGMKLWFEDGDERQQKF---TTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 317
            +P     ++T  G  PA++ VDGDL   WS +G GAW   +L  +  +S + + +  GD+R+  F    +    S + ++ + ES  G   + E + F +    + V IVG+GNT++DWN
Sbjct:   31 VPVSAVTASTDDGNVPANT-VDGDLATRWSGKGDGAWIRYDLGSSTKISSIGIAWHHGDKRKSTFLVQASADAKSWQTVVGQRES-SGRTTDFEVYDFADRAA-RYVQIVGFGNTLSDWN 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.820e-38100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
polysaccharide1.390e-731.67lyase family 7 protein n=1 Tax=Micromonospora sp. ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008979Galactose-binding-like domain superfamilyGENE3D2.60.120.260coord: 203..318
e-value: 8.7E-9
score: 37.5
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 199..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11322contigEcto-sp9_F_contig11322:490..3385 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11322.1140.1mRNA_Ecto-sp9_F_contig11322.1140.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11322 490..3385 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11322.1140.1 ID=prot_Ecto-sp9_F_contig11322.1140.1|Name=mRNA_Ecto-sp9_F_contig11322.1140.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=319bp
SSGTDDDSSDGDTGGSSSVNSAQPFSDGSSTSTSSNSSGGDSSDSSGGGA
SSSSSSGGDSSSSGGDSSSDGSASSSSGSDSSSSGGGGSSSDGSTSSSSA
GDISSSGGEGSSSSDSDSDSGSGSGSGSGSGSGSAQQRAERQQQQQHGSG
SGSSVSSTQSDSADEPTAPPSETSQEDEEEEEDGIEEGSDESGDCQPVPL
LPSYIQASTTTQGEHPASSLVDGDLNNEWSAQGAGAWFSVELPEAVVLSG
MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEML
IKSVMIVGYGNTINDWNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like_sf