mRNA_Ecto-sp9_F_contig11322.1140.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11322.1140.1
Unique NamemRNA_Ecto-sp9_F_contig11322.1140.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.820e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:  751 MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 951
            MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN
Sbjct:    1 MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 67
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BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Match: polysaccharide (lyase family 7 protein n=1 Tax=Micromonospora sp. HNM0581 TaxID=2716341 RepID=UPI00146F3243)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-7
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:  601 LPSYIQASTTTQGEHPASSLVDGDLNNEWSAQGAGAWFSVELPEAVVLSGMKLWFEDGDERQQKF---TTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEMLIKSVMIVGYGNTINDWN 951
            +P     ++T  G  PA++ VDGDL   WS +G GAW   +L  +  +S + + +  GD+R+  F    +    S + ++ + ES  G   + E + F +    + V IVG+GNT++DWN
Sbjct:   31 VPVSAVTASTDDGNVPANT-VDGDLATRWSGKGDGAWIRYDLGSSTKISSIGIAWHHGDKRKSTFLVQASADAKSWQTVVGQRES-SGRTTDFEVYDFADRAA-RYVQIVGFGNTLSDWN 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11322.1140.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.820e-38100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
polysaccharide1.390e-731.67lyase family 7 protein n=1 Tax=Micromonospora sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11322contigEcto-sp9_F_contig11322:490..3385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog1453501.JELR01000001_gene2459
KEGG koko:K01729
KEGG ReactionR03706
KEGG Pathwayko00051,map00051
EggNOG free text desc.F5/8 type C domain
EggNOG OGs1R7YM@1224,1RRZ6@1236,468I7@72275,COG2931@1,COG2931@2,COG3291@1,COG3291@2
EC4.2.2.3
COG Functional cat.G
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size957
Cds size957
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11322.1140.1prot_Ecto-sp9_F_contig11322.1140.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11322 490..3385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928379.217242-CDS-Ecto-sp9_F_contig11322:489..6241622928379.217242-CDS-Ecto-sp9_F_contig11322:489..624Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 490..624 -
1692277852.175662-CDS-Ecto-sp9_F_contig11322:489..6241692277852.175662-CDS-Ecto-sp9_F_contig11322:489..624Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 490..624 -
1622928379.2309275-CDS-Ecto-sp9_F_contig11322:976..11021622928379.2309275-CDS-Ecto-sp9_F_contig11322:976..1102Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 977..1102 -
1692277852.1918693-CDS-Ecto-sp9_F_contig11322:976..11021692277852.1918693-CDS-Ecto-sp9_F_contig11322:976..1102Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 977..1102 -
1622928379.2474887-CDS-Ecto-sp9_F_contig11322:1695..17941622928379.2474887-CDS-Ecto-sp9_F_contig11322:1695..1794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 1696..1794 -
1692277852.2018337-CDS-Ecto-sp9_F_contig11322:1695..17941692277852.2018337-CDS-Ecto-sp9_F_contig11322:1695..1794Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 1696..1794 -
1622928379.2616549-CDS-Ecto-sp9_F_contig11322:2758..29151622928379.2616549-CDS-Ecto-sp9_F_contig11322:2758..2915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 2759..2915 -
1692277852.2113276-CDS-Ecto-sp9_F_contig11322:2758..29151692277852.2113276-CDS-Ecto-sp9_F_contig11322:2758..2915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 2759..2915 -
1622928379.2757673-CDS-Ecto-sp9_F_contig11322:2945..33851622928379.2757673-CDS-Ecto-sp9_F_contig11322:2945..3385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 2946..3385 -
1692277852.2211473-CDS-Ecto-sp9_F_contig11322:2945..33851692277852.2211473-CDS-Ecto-sp9_F_contig11322:2945..3385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11322 2946..3385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11322.1140.1

>prot_Ecto-sp9_F_contig11322.1140.1 ID=prot_Ecto-sp9_F_contig11322.1140.1|Name=mRNA_Ecto-sp9_F_contig11322.1140.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=319bp
SSGTDDDSSDGDTGGSSSVNSAQPFSDGSSTSTSSNSSGGDSSDSSGGGA
SSSSSSGGDSSSSGGDSSSDGSASSSSGSDSSSSGGGGSSSDGSTSSSSA
GDISSSGGEGSSSSDSDSDSGSGSGSGSGSGSGSAQQRAERQQQQQHGSG
SGSSVSSTQSDSADEPTAPPSETSQEDEEEEEDGIEEGSDESGDCQPVPL
LPSYIQASTTTQGEHPASSLVDGDLNNEWSAQGAGAWFSVELPEAVVLSG
MKLWFEDGDERQQKFTTVCVGSGEVILQEEESVMGEAGEGEFFPFQEEML
IKSVMIVGYGNTINDWNR*
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mRNA from alignment at Ecto-sp9_F_contig11322:490..3385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11322.1140.1 ID=mRNA_Ecto-sp9_F_contig11322.1140.1|Name=mRNA_Ecto-sp9_F_contig11322.1140.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2896bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11322:490..3385- (Ectocarpus species9 EcSCA_722f female)
AGCAGCGGCACCGATGATGACAGCAGTGACGGCGACACCGGCGGGAGCAG
CAGCGTCAACAGCGCGCAGCCATTCAGCGACGGTAGCAGCACCAGCACCA
GCAGCAATAGCAGTGGTGGCGACAGCAGCGACAGCAGCGGCGGTGGCGCC
AGCAGCAGCAGCAGCAGCGGTGGCGACAGCAGCAGCAGCGGTGGCGACAG
CAGCAGCGACGGTAGCGCCAGCAGTAGCAGCGGTAGCGACAGCAGCAGCA
GCGGCGGTGGCGGCAGCAGCAGCGACGGTAGCACCAGCAGTAGCAGCGCT
GGCGACATCAGCAGCAGCGGTGGCGAAGGCAGCAGCAGCAGCGACAGCGA
CAGCGACAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCA
GCGCGCAGCAGCGCGCAGAGCGACAGCAGCAGCAGCAGCAGTGACAGCGA
CAGCGACAGCGCAGCGGCAGCGGCAGCGGCAGCGGCAGCAGCGTCAGCAG
CACGCAGAGCGACAGCGCCGACGAGCCGACCGCCCCACCGTCAGAAACGA
GCCAGGAGGACGAGGAGGAGGAGGAGGATGGGATTGAAGAAGGGAGCGAC
GAATCTGGGGATTGCCAGCCAGTGCCGGTAAGGATATGCACACTTTCAGA
AAAAATGTGCTGGTAGTCCTTCAGTGACGCTGCGCAGGCCGAAATAAAAT
AAACCAAACGAGTTTTTACCATCCGCGCACAACAGCACGGACAACAACCA
GTGGCCCTCCTAATAAGGATTTGTGTATTTTTCCAGTGAATTCCGGTGAG
GTCATGCACCCCATTCAGTCAAGACAACCTTCCCTCATATTGTCGTTAAA
GGAGCCGAAATCACACGAGTATCGAAACCGAAATCAAACCGGTGGTCTAG
ACTTGTTTTTGGTAATTCATTTTTGTGTGCTTTGCGTTGGCCGCCGCACC
GAATGCACTCACGCGTGTCCCCTACTTTTTTCGTATGAACAACAGAAAAT
TGTTCCCTCCTCCCCCGAAATGGTGTTCCATCCGATGTTATTGTGTGAAT
GAGGAGTGAATTCAAAGAAACCCCTCTATCGTACCGCTATCGCAAATTAG
CGCCGCCGGCAGCACTAGCGGCTATGGCCACCCGGCAGTATGGTAACGCC
ACTTCTTCACCCCCGTCTTCCTGTTTCGGCGCCTTAGCTGCTGCCCTCGC
CATCCTCAGTTCACACAACGCTTTTGGTGACCTCTCGTTTCGATTCTGTA
GCTGCTGCCCTCCCATAGTTTGGTCATACGACGCCCTCCCTCATTTTCCA
TCTCGATGCTGCAGCTGTTGCCCTCGTCATGTTCAGGCCACACGACACTT
TCTGACCTCCCTCCCATCCCCATATCGTCCATGTCAGTGTCTCAGCTGCT
GCCTCGTAGAATAAGGTCACACGACGCTTTCTGACCTCCTTCTTCCCCCC
TCGTTTTCTTCTGAATGTGGCCCCCTCTTCCCCCCTCGTTTTCTTCTGAA
TGCGGCCCTCGCGTGTTCAGGCAACAACACCACTTTCTGATCCCTTCTTC
GTATATACCCCTTCGTTTCCATCTCGACGCTGCTGCTGCAGCTGCTGCCC
TCGTACATTCAGGCCTCCACCACCACTCAGGGGGAGCACCCGGCGTCTTC
CCTCGTGGATGGCGACTTGAACAACGAATGGTCCGCCCAGGTGAGCATTT
TCGCTCATCCTCCGGGGTGCTCTTTGAGTTGAGCTTTCGTTGAGCTTCCG
CTACCAGGAGGAGGAGGAGGGGTAGTACAAAAGTCCGATAGACTCATAAA
AAAAAGTTCAATACGTGACGAATTCAACGTGTTGCCGATCGGTTTCGCCA
TGCATTGGACGTGCCGTTGGCTTCTTCTGTGATGATGGTGTGTGTGCTGC
GAGCAATTTGCAATTTCCTTTCGCAATCTTCTCCAATCCTGGTGAACCTG
ACACCCTTGGTCCCATATAACAATAACCTCAAAACATGTCATCGAGAGAT
TCTTATTCATGTATATCAGAAAGAAGGGGAAGAAAAGACTGAAGCGTCTG
TACATAGCACTACTACGAACTGAATTGATTTATCACGAAATGAATTGATT
TGTCACGTGATCTTTGCGAACCTCACAACTCGCTTTTGACTTGATTTCAC
TATAGTCGACTCACAACTGACGTATGGCCTTTTTCACTATGGTCTTTGTA
AGCTCACAACTCGCAAATTTCTTGACATTGTCACGAATGACTTTTATTTC
ATCATAAATGACTTTGATGCTATTATGGTGCAGGGCGCCGGCGCGTGGTT
TTCCGTCGAGCTGCCCGAGGCGGTGGTGTTGTCGGGGATGAAGCTGTGGT
TCGAGGATGGTGACGAGAGGCAGCAGAAGTTCACAACTGTCTGTGTTGGC
AGTGGAGAGGTAACGCAACAATCACCAACGACACTCATTACATTGTGGCA
GCTTTCACAGCTCGCTTAACGTTCCTCGCTGTATGCATGAGATGAAATAC
TTATTATAGAAGTGAAGCAGCAGAGAGTAGATAAACTTCTCGATACCATG
ATGAGTGTGAACCACATAGATTGCTGAACACGCACGATAACGAACAATGC
CACGTACTGATACTTGAATTCGAGTATGTATGCAGGGCGATCAAGATTGA
CACTTGCTGATATTTAGTATTGTGTTGATTGGGTGGTTCCTGGCATCCAA
TCAGGTAACTCATTGATAGGGCTTGTCTCAACCGGGTGTTTTGTTGTGCC
CAATCCATCAGGTTATCCTTCAGGAAGAAGAGAGCGTGATGGGGGAGGCC
GGAGAGGGAGAGTTCTTCCCATTCCAAGAAGAGATGCTGATCAAGTCGGT
CATGATCGTGGGATACGGGAATACCATCAACGACTGGAATAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11322:490..3385-

>mRNA_Ecto-sp9_F_contig11322.1140.1 ID=mRNA_Ecto-sp9_F_contig11322.1140.1|Name=mRNA_Ecto-sp9_F_contig11322.1140.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1914bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11322:490..3385- (Ectocarpus species9 EcSCA_722f female)
AGCAGCGGCACCGATGATGACAGCAGTGACGGCGACACCGGCGGGAGCAG
CAGCGTCAACAGCGCGCAGCCATTCAGCGACGGTAGCAGCACCAGCACCA
GCAGCAATAGCAGTGGTGGCGACAGCAGCGACAGCAGCGGCGGTGGCGCC
AGCAGCAGCAGCAGCAGCGGTGGCGACAGCAGCAGCAGCGGTGGCGACAG
CAGCAGCGACGGTAGCGCCAGCAGTAGCAGCGGTAGCGACAGCAGCAGCA
GCGGCGGTGGCGGCAGCAGCAGCGACGGTAGCACCAGCAGTAGCAGCGCT
GGCGACATCAGCAGCAGCGGTGGCGAAGGCAGCAGCAGCAGCGACAGCGA
CAGCGACAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCA
GCGCGCAGCAGCGCGCAGAGCGACAGCAGCAGCAGCAGCAAGCAGCGGCA
CCGATGATGACAGCAGTGACGGCGACACCGGCGGGAGCAGCAGCGTCAAC
AGCGCGCAGCCATTCAGCGACGGTAGCAGCACCAGCACCAGCAGCAATAG
CAGTGGTGGCGACAGCAGCGACAGCAGCGGCGGTGGCGCCAGCAGCAGCA
GCAGCAGCGGTGGCGACAGCAGCAGCAGCGGTGGCGACAGCAGCAGCGAC
GGTAGCGCCAGCAGTAGCAGCGGTAGCGACAGCAGCAGCAGCGGCGGTGG
CGGCAGCAGCAGCGACGGTAGCACCAGCAGTAGCAGCGCTGGCGACATCA
GCAGCAGCGGTGGCGAAGGCAGCAGCAGCAGCGACAGCGACAGCGACAGC
GGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGCGCAGCA
GCGCGCAGAGCGACAGCAGCAGCAGCAGCACGGCAGCGGCAGCGGCAGCA
GCGTCAGCAGCACGCAGAGCGACAGCGCCGACGAGCCGACCGCCCCACCG
TCAGAAACGAGCCAGGAGGACGAGGAGGAGGAGGAGGATGGGATTGAAGA
AGGGAGCGACGAATCTGGGGATTGCCAGCCAGTGCCGCGGCAGCGGCAGC
GGCAGCAGCGTCAGCAGCACGCAGAGCGACAGCGCCGACGAGCCGACCGC
CCCACCGTCAGAAACGAGCCAGGAGGACGAGGAGGAGGAGGAGGATGGGA
TTGAAGAAGGGAGCGACGAATCTGGGGATTGCCAGCCAGTGCCGCTGCTG
CCCTCGTACATTCAGGCCTCCACCACCACTCAGGGGGAGCACCCGGCGTC
TTCCCTCGTGGATGGCGACTTGAACAACGAATGGTCCGCCCAGCTGCTGC
CCTCGTACATTCAGGCCTCCACCACCACTCAGGGGGAGCACCCGGCGTCT
TCCCTCGTGGATGGCGACTTGAACAACGAATGGTCCGCCCAGGGCGCCGG
CGCGTGGTTTTCCGTCGAGCTGCCCGAGGCGGTGGTGTTGTCGGGGATGA
AGCTGTGGTTCGAGGATGGTGACGAGAGGCAGCAGAAGTTCACAACTGTC
TGTGTTGGCAGTGGAGAGGGCGCCGGCGCGTGGTTTTCCGTCGAGCTGCC
CGAGGCGGTGGTGTTGTCGGGGATGAAGCTGTGGTTCGAGGATGGTGACG
AGAGGCAGCAGAAGTTCACAACTGTCTGTGTTGGCAGTGGAGAGGTTATC
CTTCAGGAAGAAGAGAGCGTGATGGGGGAGGCCGGAGAGGGAGAGTTCTT
CCCATTCCAAGAAGAGATGCTGATCAAGTCGGTCATGATCGTGGGATACG
GGAATACCATCAACGACTGGAATAGGTGAGTTATCCTTCAGGAAGAAGAG
AGCGTGATGGGGGAGGCCGGAGAGGGAGAGTTCTTCCCATTCCAAGAAGA
GATGCTGATCAAGTCGGTCATGATCGTGGGATACGGGAATACCATCAACG
ACTGGAATAGGTGA
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